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FEAT: add bedtools getfasta. (#59) #588

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FEAT: add bedtools getfasta. (#59)

FEAT: add bedtools getfasta. (#59) #588

Run time

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Job Run time
test / run_ci_check_job
2s
test / list
39s
test / viash_test (salmon_quant, salmon, src/salmon/salmon_quant/config.vsh.yaml, src/salmon/salmon_quant/)
1m 53s
test / viash_test (salmon_index, salmon, src/salmon/salmon_index/config.vsh.yaml, src/salmon/salmon_index/)
1m 53s
test / viash_test (bgzip, src/bgzip/config.vsh.yaml, src/bgzip/)
1m 36s
test / viash_test (lofreq_indelqual, lofreq, src/lofreq/indelqual/config.vsh.yaml, src/lofreq/indelqual/)
37s
test / viash_test (lofreq_call, lofreq, src/lofreq/call/config.vsh.yaml, src/lofreq/call/)
1m 41s
test / viash_test (busco_download_datasets, busco, src/busco/busco_download_datasets/config.vsh.yaml, sr...
1m 45s
test / viash_test (busco_list_datasets, busco, src/busco/busco_list_datasets/config.vsh.yaml, src/busco/...
2m 3s
test / viash_test (busco_run, busco, src/busco/busco_run/config.vsh.yaml, src/busco/busco_run/)
6m 21s
test / viash_test (bcl_convert, src/bcl_convert/config.vsh.yaml, src/bcl_convert/)
1m 54s
test / viash_test (fastp, src/fastp/config.vsh.yaml, src/fastp/)
50s
test / viash_test (cutadapt, src/cutadapt/config.vsh.yaml, src/cutadapt/)
57s
test / viash_test (featurecounts, src/featurecounts/config.vsh.yaml, src/featurecounts/)
46s
test / viash_test (multiqc, src/multiqc/config.vsh.yaml, src/multiqc/)
1m 19s
test / viash_test (arriba, src/arriba/config.vsh.yaml, src/arriba/)
1m 9s
test / viash_test (gffread, src/gffread/config.vsh.yaml, src/gffread/)
36s
test / viash_test (falco, src/falco/config.vsh.yaml, src/falco/)
1m 15s
test / viash_test (pear, src/pear/config.vsh.yaml, src/pear/)
2m 34s
test / viash_test (star_align_reads, star, src/star/star_align_reads/config.vsh.yaml, src/star/star_alig...
4m 15s
test / viash_test (samtools_idxstats, samtools, src/samtools/samtools_idxstats/config.vsh.yaml, src/samt...
39s
test / viash_test (samtools_sort, samtools, src/samtools/samtools_sort/config.vsh.yaml, src/samtools/sam...
35s
test / viash_test (samtools_faidx, samtools, src/samtools/samtools_faidx/config.vsh.yaml, src/samtools/s...
43s
test / viash_test (samtools_stats, samtools, src/samtools/samtools_stats/config.vsh.yaml, src/samtools/s...
37s
test / viash_test (samtools_view, samtools, src/samtools/samtools_view/config.vsh.yaml, src/samtools/sam...
41s
test / viash_test (samtools_collate, samtools, src/samtools/samtools_collate/config.vsh.yaml, src/samtoo...
55s
test / viash_test (samtools_flagstat, samtools, src/samtools/samtools_flagstat/config.vsh.yaml, src/samt...
38s
test / viash_test (samtools_index, samtools, src/samtools/samtools_index/config.vsh.yaml, src/samtools/s...
1m 43s
test / viash_test (samtools_fastq, samtools, src/samtools/samtools_fastq/config.vsh.yaml, src/samtools/s...
37s
test / viash_test (bedtools_getfasta, bedtools, src/bedtools/bedtools_getfasta/config.vsh.yaml, src/bedt...
41s
41m 54s