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viash-hub / biobox Public

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Fork 6
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Component Testing

Update operational code #573

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Update operational code

Update operational code #573

Summary
Jobs
- run_ci_check_job
  
  list
  
  viash_test (salmon/salmon_quant, src/salmon/salmon_quant/config.vsh.yaml, src/salmon/salmon_quant/)
  
  viash_test (salmon/salmon_index, src/salmon/salmon_index/config.vsh.yaml, src/salmon/salmon_index/)
  
  viash_test (/bgzip, src/bgzip/config.vsh.yaml, src/bgzip/)
  
  viash_test (lofreq/lofreq_indelqual, src/lofreq/indelqual/config.vsh.yaml, src/lofreq/indelqual/)
  
  viash_test (lofreq/lofreq_call, src/lofreq/call/config.vsh.yaml, src/lofreq/call/)
  
  viash_test (busco/busco_download_datasets, src/busco/busco_download_datasets/config.vsh.yaml, src...
  
  viash_test (busco/busco_list_datasets, src/busco/busco_list_datasets/config.vsh.yaml, src/busco/b...
  
  viash_test (busco/busco_run, src/busco/busco_run/config.vsh.yaml, src/busco/busco_run/)
  
  viash_test (/bcl_convert, src/bcl_convert/config.vsh.yaml, src/bcl_convert/)
  
  viash_test (/fastp, src/fastp/config.vsh.yaml, src/fastp/)
  
  viash_test (/featurecounts, src/featurecounts/config.vsh.yaml, src/featurecounts/)
  
  viash_test (/multiqc, src/multiqc/config.vsh.yaml, src/multiqc/)
  
  viash_test (/arriba, src/arriba/config.vsh.yaml, src/arriba/)
  
  viash_test (/gffread, src/gffread/config.vsh.yaml, src/gffread/)
  
  viash_test (/falco, src/falco/config.vsh.yaml, src/falco/)
  
  viash_test (/pear, src/pear/config.vsh.yaml, src/pear/)
  
  viash_test (star/star_align_reads, src/star/star_align_reads/config.vsh.yaml, src/star/star_align...
  
  viash_test (samtools/samtools_idxstats, src/samtools/samtools_idxstats/config.vsh.yaml, src/samto...
  
  viash_test (samtools/samtools_sort, src/samtools/samtools_sort/config.vsh.yaml, src/samtools/samt...
  
  viash_test (samtools/samtools_faidx, src/samtools/samtools_faidx/config.vsh.yaml, src/samtools/sa...
  
  viash_test (samtools/samtools_stats, src/samtools/samtools_stats/config.vsh.yaml, src/samtools/sa...
  
  viash_test (samtools/samtools_view, src/samtools/samtools_view/config.vsh.yaml, src/samtools/samt...
  
  viash_test (samtools/samtools_collate, src/samtools/samtools_collate/config.vsh.yaml, src/samtool...
  
  viash_test (samtools/samtools_flagstat, src/samtools/samtools_flagstat/config.vsh.yaml, src/samto...
  
  viash_test (samtools/samtools_index, src/samtools/samtools_index/config.vsh.yaml, src/samtools/sa...
  
  viash_test (samtools/samtools_fastq, src/samtools/samtools_fastq/config.vsh.yaml, src/samtools/sa...
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Update operational code #573

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