complete script for qualimap #548
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Component Testing | |
| on: | |
| pull_request: | |
| push: | |
| branches: [ '**' ] | |
| jobs: | |
| run_ci_check_job: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| run_ci: ${{ steps.github_cli.outputs.check }} | |
| steps: | |
| - name: 'Check if branch has an existing pull request and the trigger was a push' | |
| id: github_cli | |
| run: | | |
| pull_request=$(gh pr list -R ${{ github.repository }} -H ${{ github.ref_name }} --json url --state open --limit 1 | jq '.[0].url') | |
| # If the branch has a PR and this run was triggered by a push event, do not run | |
| if [[ "$pull_request" != "null" && "$GITHUB_REF_NAME" != "main" && "${{ github.event_name == 'push' }}" == "true" && "${{ !contains(github.event.head_commit.message, 'ci force') }}" == "true" ]]; then | |
| echo "check=false" >> $GITHUB_OUTPUT | |
| else | |
| echo "check=true" >> $GITHUB_OUTPUT | |
| fi | |
| env: | |
| GH_TOKEN: ${{ github.token }} | |
| # phase 1 | |
| list: | |
| needs: run_ci_check_job | |
| runs-on: ubuntu-latest | |
| if: ${{ needs.run_ci_check_job.outputs.run_ci == 'true' }} | |
| outputs: | |
| matrix: ${{ steps.set_matrix.outputs.matrix }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Get head git commit message | |
| id: get_head_commit_message | |
| run: echo "HEAD_COMMIT_MESSAGE=$(git show -s --format=%s ${{ github.event.pull_request.head.sha || github.sha }})" >> "$GITHUB_OUTPUT" | |
| - uses: viash-io/viash-actions/setup@v5 | |
| - name: Check if all config can be parsed if there is no unicode support | |
| run: | | |
| LANG=C viash ns list > /dev/null | |
| # see https://github.com/viash-io/viash/issues/654 | |
| # and https://github.com/viash-io/viash-actions/pull/27 | |
| # - name: Get changed files | |
| # id: changed-files | |
| # uses: tj-actions/changed-files@v42 | |
| # with: | |
| # separator: ";" | |
| # diff_relative: true | |
| # - id: ns_list | |
| # uses: viash-io/viash-actions/ns-list@v5 | |
| # with: | |
| # platform: docker | |
| # format: json | |
| # query: ^(?!workflows) | |
| # - id: ns_list_filtered | |
| # uses: viash-io/viash-actions/project/detect-changed-components@v5 | |
| # with: | |
| # input_file: "${{ steps.ns_list.outputs.output_file }}" | |
| # - id: set_matrix | |
| # run: | | |
| # echo "matrix=$(jq -c '[ .[] | | |
| # { | |
| # "name": (.functionality.namespace + "/" + .functionality.name), | |
| # "config": .info.config, | |
| # "dir": .info.config | capture("^(?<dir>.*\/)").dir | |
| # } | |
| # ]' ${{ contains(steps.get_head_commit_message.outputs.HEAD_COMMIT_MESSAGE, 'ci force') && steps.ns_list.outputs.output_file || steps.ns_list_filtered.outputs.output_file }} )" >> $GITHUB_OUTPUT | |
| - id: set_matrix | |
| run: | | |
| viash ns list --format json > ns_list.json | |
| echo "matrix=$(jq -c '[ .[] | | |
| { | |
| "name": (.namespace + "/" + .name), | |
| "config": .build_info.config, | |
| "dir": .build_info.config | capture("^(?<dir>.*\/)").dir | |
| } | |
| ]' ns_list.json )" >> $GITHUB_OUTPUT | |
| # phase 2 | |
| viash_test: | |
| needs: list | |
| if: ${{ needs.list.outputs.matrix != '[]' && needs.list.outputs.matrix != '' }} | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| component: ${{ fromJson(needs.list.outputs.matrix) }} | |
| steps: | |
| # Remove unnecessary files to free up space. Otherwise, we get 'no space left on device.' | |
| - uses: data-intuitive/reclaim-the-bytes@v2 | |
| - uses: actions/checkout@v4 | |
| - uses: viash-io/viash-actions/setup@v5 | |
| - name: Run test | |
| timeout-minutes: 30 | |
| run: | | |
| viash test \ | |
| "${{ matrix.component.config }}" \ | |
| --cpus 2 \ | |
| --memory "6gb" |