Merge pull request #449 from stevenweaver/master

1.4.2
veg · Dec 11, 2023 · fd26c8c · fd26c8c
2 parents d2bcf04 + 3e784bc
commit fd26c8c
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Showing 2 changed files with 5 additions and 4 deletions.
diff --git a/package.json b/package.json
@@ -1,6 +1,6 @@
 {
  "name": "phylotree",
- "version": "1.4.1",
+ "version": "1.4.2",
  "main": "dist/phylotree.js",
  "unpkg": "dist/phylotree.js",
  "jsdelivr": "dist/phylotree.js",

diff --git a/src/formats/newick.js b/src/formats/newick.js
@@ -230,14 +230,16 @@ function newickParser(nwk_str, options={}) {
  * @returns {String} newick - Phylogenetic tree serialized as a Newick string.
  */
 
-// TODO: break this out into two seperate functions
-export function getNewick(annotator, root) {
 
+export function getNewick(annotator, root) {
  let self = this;
 
  if (!annotator) annotator = d => '';
 
  function nodeDisplay(n) {
+ // Skip the node if it is hidden
+ if (n.notshown) return;
+
  if (!isLeafNode(n)) {
  element_array.push("(");
  n.children.forEach(function(d, i) {
@@ -273,7 +275,6 @@ export function getNewick(annotator, root) {
  nodeDisplay(root || this.nodes);
 
  return element_array.join("")+";";
-
 }
 
 export default newickParser;