LGTM fixes

veg · Dec 16, 2020 · c79a7ad · c79a7ad
1 parent c2906f2
commit c79a7ad
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Showing 2 changed files with 3 additions and 4 deletions.
diff --git a/src/core/likefunc.cpp b/src/core/likefunc.cpp
@@ -3690,8 +3690,8 @@ void            _LikelihoodFunction::SetupLFCaches              (void) {
         _AVLListX    foundCharacters (&foundCharactersAux);
         _String      aState ((unsigned long)atomSize);
 
-        char  const ** columnBlock      = (char const**)alloca(atomSize*sizeof (const char*));
-        hyFloat      * translationCache  = (hyFloat*)alloca (sizeof (hyFloat)* stateSpaceDim);
+        char  const ** columnBlock      = (char const**)malloc(atomSize*sizeof (const char*));
+        hyFloat      * translationCache  = (hyFloat*)malloc (sizeof (hyFloat)* stateSpaceDim);
         _Vector  * ambigs            = new _Vector();
 
         for (unsigned long siteID = 0UL; siteID < patternCount; siteID ++) {
@@ -3726,7 +3726,7 @@ void            _LikelihoodFunction::SetupLFCaches              (void) {
                 conditionalTerminalNodeStateFlag [i][leafID*patternCount + siteID] = translation;
             }
         }
-       // free (columnBlock); free (translationCache);
+        free (columnBlock); free (translationCache);
         conditionalTerminalNodeLikelihoodCaches < ambigs;
         errorTolerance = MAX (1.,round (log (1.+maxFilterSize)/log (10)));
 #ifdef MDSOCL

diff --git a/src/lib/setup.py b/src/lib/setup.py
@@ -5,7 +5,6 @@
 from glob                import glob
 import sys
 
-from platform import architecture, mac_ver
 
 #incdir = get_python_inc(plat_specific=1)
 #print incdir