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Library update
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mirimia authored Dec 22, 2019
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23 changes: 12 additions & 11 deletions README.md
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Expand Up @@ -113,54 +113,55 @@ For manual, install each species or all of them to any location by, e.g. for Hsa
Available libraries and species:

Human (Hsa, hg19):
- Current version:
- Current version: 6.3G [vastdb.hsa.20.12.19.tar.gz](http://vastdb.crg.eu/libs/vastdb.hsa.20.12.19.tar.gz).
- Previous versions: 6.3G [vastdb.hsa.16.02.18.tar.gz](http://vastdb.crg.eu/libs/vastdb.hsa.16.02.18.tar.gz).

Mouse (Mmu, mm9):
- Current version:
- Current version: 5.7G [vastdb.mmu.20.12.19.tar.gz](http://vastdb.crg.eu/libs/vastdb.mmu.20.12.19.tar.gz).
- Previous versions: 5.7G [vastdb.mmu.16.02.18.tar.gz](http://vastdb.crg.eu/libs/vastdb.mmu.16.02.18.tar.gz).

Chicken (Gg3, galGal3):
- Current version:
- Current version: 1.7G [vastdb.gg3.20.12.19.tar.gz](http://vastdb.crg.eu/libs/vastdb.gg3.20.12.19.tar.gz).
- Previous versions: 1.6G [vastdb.gg3.16.02.18.tar.gz](http://vastdb.crg.eu/libs/vastdb.gg3.16.02.18.tar.gz).

Zebrafish (Dre, danRer10):
- Current version:
- Current version: 2.2G [vastdb.dre.20.12.19.tar.gz](http://vastdb.crg.eu/libs/vastdb.dre.20.12.19.tar.gz).
- Previous versions: 2.2G [vastdb.dre.01.12.18.tar.gz](http://vastdb.crg.eu/libs/vastdb.dre.01.12.18.tar.gz).

Amphioxus (Bla, Bl71nemr):
- Current version:
- Current version: 1.5G [vastdb.bla.20.12.19.tar.gz](http://vastdb.crg.eu/libs/vastdb.bla.20.12.19.tar.gz).
- Previous versions: 1.5G [vastdb.bla.01.12.18.tar.gz](http://vastdb.crg.eu/libs/vastdb.bla.01.12.18.tar.gz).

Sea urchin (Spu, Spur3.1):
- Current version:
- Current version: 1.2G [vastdb.spu.20.12.19.tar.gz](http://vastdb.crg.eu/libs/vastdb.spu.20.12.19.tar.gz).
- Previous versions: 1.2G [vastdb.spu.01.12.18.tar.gz](http://vastdb.crg.eu/libs/vastdb.spu.01.12.18.tar.gz).

Fruitfly (Dme, BDGP6):
- Current version:
- Current version: 319M [vastdb.dme.20.12.19.tar.gz](http://vastdb.crg.eu/libs/vastdb.dme.20.12.19.tar.gz).
- Previous versions: 317M [vastdb.dme.01.12.18.tar.gz](http://vastdb.crg.eu/libs/vastdb.dme.01.12.18.tar.gz).

Centipede (Sma, Smar1):
- Current version:
- Current version: 585M [vastdb.sma.20.12.19.tar.gz](http://vastdb.crg.eu/libs/vastdb.sma.20.12.19.tar.gz).
- Previous versions: 585M [vastdb.sma.01.12.18.tar.gz](http://vastdb.crg.eu/libs/vastdb.sma.01.12.18.tar.gz).

C. elegans (Cel, WBcel235):
- Current version:
- Current version: 395M [vastdb.cel.20.12.19.tar.gz](http://vastdb.crg.eu/libs/vastdb.cel.20.12.19.tar.gz).
- Previous versions: 395M [vastdb.cel.01.12.18.tar.gz](http://vastdb.crg.eu/libs/vastdb.cel.01.12.18.tar.gz).

Planarian (Sme, v31):
- Current version:
- Current version: 952M [vastdb.sme.20.12.19.tar.gz](http://vastdb.crg.eu/libs/vastdb.sme.20.12.19.tar.gz).
- Previous versions: 952M [vastdb.sme.16.02.18.tar.gz](http://vastdb.crg.eu/libs/vastdb.sme.16.02.18.tar.gz).

Sea anemone (Nve, GCA_000209225):
- Current version:
- Current version: 679M [vastdb.nve.20.12.19.tar.gz](http://vastdb.crg.eu/libs/vastdb.nve.20.12.19.tar.gz).
- Previous versions: 679M [vastdb.nve.01.12.18.tar.gz](http://vastdb.crg.eu/libs/vastdb.nve.01.12.18.tar.gz).


** NOTE: from release v2.0.0, new VASTDB libraries are needed for all species.

** NOTE: release v2.3.0 included a new release of libraries (\*.20.12.19.tar.gz). These libraries can be used (and are adviced to be used) with any previous vast-tools version.


If manually installed to central location, link the database files to vast-tools directory using:
~~~~
> ln -s <path to VASTDB> VASTDB
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