Update strandedness.smk

vanheeringen-lab · Aug 1, 2023 · f760e87 · f760e87
1 parent 3b29aa4
commit f760e87
Showing 1 changed file with 4 additions and 1 deletion.
diff --git a/seq2science/rules/strandedness.smk b/seq2science/rules/strandedness.smk
@@ -36,7 +36,10 @@ def get_strandedness(report_file, fmt="htseq"):
 
     cutoff = 0.6
     with open(report_file) as rf:
-        fwd, rev = rf.read().splitlines()[2:4]
+        try:
+            fwd, rev = rf.read().splitlines()[2:4]
+        except:
+            logger.error(f"An unexpected issue has occurred with inferring the strandedness of this file: {report_file}...")
 
     fwd = float(fwd.split(": ")[1])
     if fwd > cutoff: