Update dag_tests.sh

vanheeringen-lab · Feb 3, 2024 · c858929 · c858929
1 parent 4e8c6a7
commit c858929
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/tests/dag_tests.sh b/tests/dag_tests.sh
@@ -67,10 +67,10 @@ if [ $1 = "alignment" ]; then
   assert_rulecount $1 'ena2fastq_PE|sra2fastq_PE' 1
   assert_rulecount $1 'ena2fastq_PE|sra2fastq_PE' 1
 
-  printf "\ndownload gsa\n"
-  seq2science run download-fastq -nr --configfile tests/$WF/default_config.yaml --snakemakeOptions quiet=True config={samples:tests/download_fastq/gsa_encode_samples.tsv} | tee tests/local_test_results/${1}_dag
-  assert_rulecount $1 'gsa_or_encode2fastq_SE' 5
-  assert_rulecount $1 'gsa_or_encode2fastq_PE' 1
+  # printf "\ndownload gsa\n"
+  # seq2science run download-fastq -nr --configfile tests/$WF/default_config.yaml --snakemakeOptions quiet=True config={samples:tests/download_fastq/gsa_encode_samples.tsv} | tee tests/local_test_results/${1}_dag
+  # assert_rulecount $1 'gsa_or_encode2fastq_SE' 5
+  # assert_rulecount $1 'gsa_or_encode2fastq_PE' 1
 
   # alignment workflow
   WF=alignment