Merge branch 'develop' into greedyscheduler

vanheeringen-lab · Jul 28, 2023 · c7765c0 · c7765c0
2 parents a8f0dbb + 3b29aa4
commit c7765c0
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/seq2science/scripts/deseq2/utils.R b/seq2science/scripts/deseq2/utils.R
@@ -33,7 +33,7 @@ parse_contrast <- function(contrast) {
 #' collapse technical replicates (if present) and
 #' convert to descriptive names (if present).
 parse_samples <- function(samples_file, assembly_name, replicates) {
-  samples <- read.delim(samples_file, sep = "\t", na.strings = "", comment.char = "#", stringsAsFactors = F, row.names = "sample", check.names = F)
+  samples <- read.delim(samples_file, sep = "\t", na.strings = "", comment.char = "#", stringsAsFactors = F, row.names = "sample", check.names = F, colClasses="character")
   colnames(samples) <- gsub("\\s+", "", colnames(samples))  # strip whitespace from column names
 
   # custom assemblies have a suffix not present in the samples.tsv