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Code accompanying Tooley et al. (2024), Prenatal environment is associated with the pace of cortical network development over the first three years of life. https://www.biorxiv.org/content/10.1101/2023.08.18.552639v1

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Tooley2023_prenatal_env_cortical_network_dev

Author: Ursula Tooley, 2023-2024

This repository contains code for the analyses described in our paper:

"Prenatal environment is associated with the pace of cortical network development over the first three years of life.""

Preprint available here.

Final paper link will be available here.

Dependencies & operating system

This code was run on Mac OS Monterey 12.6.3.

MATLAB version 2021b and R version 4.3.1 (2023-06-16) were used to conduct analyses in this paper.

Preprocessing was performed with 4dfp, Melbourne Children’s Regional Brain Atlases (MCRIB), Connectome Workbench 1.2.3, and Freesurfer 7.2.

Organization

The gamm_models folder contains a script with functions necessary for running the code called gamm_functions.R. This script is sourced in the main analysis file, titled manuscript_analyses.R and the supplementary analysis file, titled sensitivity_analyses.R, prior to continuing analyses.

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Code accompanying Tooley et al. (2024), Prenatal environment is associated with the pace of cortical network development over the first three years of life. https://www.biorxiv.org/content/10.1101/2023.08.18.552639v1

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