How to force conda

Force tool to use Conda and not Singularity

WARNING: This is very, very ugly, ugly, and should only be used as a last resort.

A random example, using the tool limma_voom:

• Edit /srv/galaxy/dynamic_rules/usegalaxy/tool_destinations.yaml:
  • limma_voom: { runner: slurm }
• Remove Limma Voom from the Galaxy using admin interface
• Un-comment <conda /> from /srv/galaxy/config/dependency_resolvers_conf.xml
• Restart Galaxy (sudo systemctl restart galaxy)
• Add tool using the Galaxy admin interface
• Remove Conda from /srv/galaxy/config/dependency_resolvers_conf.xml:
  • <!-- <conda /> -->
• Restart Galaxy (sudo systemctl restart galaxy)