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Sample Analysis Functions for the BloodPAC project; repository for community notebooks

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bpa-functions

This repository contains tools for the BloodPAC community to answer and ask questions about the BloodPAC data commons.

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The demo notebook and bpa_analysis_functions_v2.py are provided to help the community get started understanding and using the BloodPAC data commons.

Python: bpa_analysis_functions

The python functions library contains commands to accomplish basic tasks like:

  • Adding API keys to your profile
  • Getting files from a bucket
  • Querying the BloodPAC API

It also contains a variety of custom functions to accomplish tasks like:

  • Query and summarize fields
  • Create plots from summarized fields
  • Create lists of files
  • etc.

To use add a line import bpa_analysis_functions_v2.py as bpa.

Community Notebooks

To further build the BloodPAC community, members are contributing notebooks around their own analysis. To add your work, please clone the repo, add your notebook, then submit a pull request.

Community notebooks can also be used to answer questions being asked in the BloodPAC Q&A forum.

https://groups.google.com/d/forum/bloodpac-q-and-a

NOTE: since this is a public repository, be sure that any notebooks you post obfuscate any sensitive data results. If you're running a Jupyter Notebook that has sensitive information, please be sure to submit a pull request with the cells not run.

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Sample Analysis Functions for the BloodPAC project; repository for community notebooks

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  • Jupyter Notebook 86.9%
  • Python 13.1%