Update peeling algorithm and test cases

[stevenhwu]

Related to #80

• Update peel forward methods using eigen matrix.resize().
  The default resize() is column ordered and some matrices need to add/remove transpose().
• Unittest
  Update old unittest and avoid resize() function.
  Implemented more unittest with fixed dataset and results.
  Add another fixture to setup the family and workspace for these tests.
• The R code used to generate and calculate are in test/script/R/generate_family_data.R

Other TODO list for #80

• Need to update methods related to peel backwards.
• Implement to unittests for peel backwards.

[dng-jenkins]

Can one of the admins verify this patch?

[reedacartwright]

Jenkins, ok to test

Reed A. Cartwright, PhD
Barrett Honors Faculty
Assistant Professor of Genomics, Evolution, and Bioinformatics
School of Life Sciences
Human and Comparative Genomics Laboratory
The Biodesign Institute

Arizona State University

Availability: http://links.asu.edu/CartwrightCalendar
Address: The Biodesign Institute, PO Box 875301, Tempe, AZ 85287-5301 USA
Packages: The Biodesign Institute, 1001 S. McAllister Ave, Tempe, AZ
85287-5301 USA
Office: Biodesign A-224A, 1-480-965-9949
Website: http://cartwrig.ht/

On Fri, Mar 25, 2016 at 5:11 PM, Jenkins Bot [email protected]
wrote:

Can one of the admins verify this patch?

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