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  1. clipplotr clipplotr Public

    A tool to facilitate comparative visualisation of CLIP data

    R 14 5

  2. ultraplex ultraplex Public

    Ultra-fast 5' and 3' demultiplexer

    Python 24 12

  3. clippy clippy Public

    A wrapper around scipy "find_peaks" function to enable peak calling of CLIP data.

    Python 2

  4. peka peka Public

    Find motifs enriched around prominent crosslinks

    Python 5 2

  5. iCount-Mini iCount-Mini Public

    Forked from genialis/iCount

    iCount, protein-RNA interaction analytics

    Python 1

Repositories

Showing 10 of 26 repositories
  • nf-quantseq Public
    ulelab/nf-quantseq’s past year of commit activity
    Nextflow 1 MIT 0 0 0 Updated Nov 14, 2024
  • splicelogos Public

    generate human 5'ss and 3'ss logos

    ulelab/splicelogos’s past year of commit activity
    R 0 0 0 0 Updated Sep 9, 2024
  • nf-aws-test Public

    A short pipeline to test nf AWS batch performance

    ulelab/nf-aws-test’s past year of commit activity
    Nextflow 0 0 0 0 Updated Jul 29, 2024
  • rna_maps Public

    Plot CLIP crosslinks around regulated exons to study position-dependent impact on pre-mRNA splicing.

    ulelab/rna_maps’s past year of commit activity
    Python 0 0 0 0 Updated Jul 18, 2024
  • peka Public

    Find motifs enriched around prominent crosslinks

    ulelab/peka’s past year of commit activity
    Python 5 GPL-3.0 2 0 0 Updated Apr 29, 2024
  • ultraplex Public

    Ultra-fast 5' and 3' demultiplexer

    ulelab/ultraplex’s past year of commit activity
    Python 24 12 20 0 Updated Apr 23, 2024
  • LIN28A_RNPreassembly_bioinformatics Public

    This repository contains the source code used for bioinformatic analyses presented in the paper by Modic et al., 2024 "Poised PABP-RNA hubs implement signal-dependent mRNA decay in development".

    ulelab/LIN28A_RNPreassembly_bioinformatics’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 29, 2024
  • clipplotr Public

    A tool to facilitate comparative visualisation of CLIP data

    ulelab/clipplotr’s past year of commit activity
    R 14 MIT 5 1 0 Updated Nov 29, 2023
  • cluster_kmers Public

    Get clusters of k-mers based solely on their sequence or in combination with enrichment in PEKA.

    ulelab/cluster_kmers’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Nov 21, 2023
  • gtf-ops Public

    Filtering GENCODE or ENSEMBLE annotation in GTF format. Annotating missing regions in iCount genomic segmentation.

    ulelab/gtf-ops’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Sep 29, 2023
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