✅ forgot to commit updated tests

uclh-criu · Oct 4, 2023 · 088c810 · 088c810
1 parent c85172a
commit 088c810
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Showing 2 changed files with 9 additions and 1 deletion.
diff --git a/src/miade/annotators.py b/src/miade/annotators.py
@@ -381,7 +381,8 @@ def _process_meta_annotations(self, concept: Concept) -> Optional[Concept]:
  if Relevance.IRRELEVANT in meta_ann_values:
  log.debug(f"Removed concept ({concept.id} | {concept.name}): irrelevant concept")
  return None
-
+ if Relevance.HISTORIC in meta_ann_values:
+ log.debug(f"No change to concept ({concept.id} | {concept.name}): historic with no conversion match")
 
  concept.category = Category.PROBLEM
 

diff --git a/tests/test_annotator.py b/tests/test_annotator.py
@@ -130,6 +130,11 @@ def test_meta_annotations(test_problems_medcat_model, test_meta_annotations_conc
  name="Endophthalmitis (historic)",
  category=Category.PROBLEM,
  ), # negex false, meta processed
+ Concept(
+ id="0000",
+ name="historic concept",
+ category=Category.PROBLEM,
+ ),
  ]
  # test just using negex for negation
  test_meta_annotations_concepts[0].negex = True
@@ -147,6 +152,8 @@ def test_meta_annotations(test_problems_medcat_model, test_meta_annotations_conc
  Concept(
  id="413241009", name="Gastritis (suspected)", category=Category.PROBLEM
  ), # negex false, meta processed
+ Concept(id="0000", name="historic concept", category=Category.PROBLEM
+ ), # historic with no conversion
  ]