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Merge pull request #2308 from jeromekelleher/beta-segfault #686

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Merge pull request #2308 from jeromekelleher/beta-segfault

Merge pull request #2308 from jeromekelleher/beta-segfault #686

Workflow file for this run

.github/workflows/wheels.yml at 7492287
name: Binary wheels
on:
push:
branches:
- main
- test
tags:
- '*'
release:
types: [published]
jobs:
OSX:
runs-on: macos-latest
strategy:
matrix:
python: [3.9, "3.10", 3.11, 3.12]
steps:
- name: Checkout
uses: actions/checkout@v4
with:
submodules: true
- name: Set up Python ${{ matrix.python }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python }}
- name: Install deps
run: |
brew install gsl
pip install --upgrade pip build
- name: Build Wheel
run: |
export PLAT="arm64"
export _PYTHON_HOST_PLATFORM="macosx-11.0-arm64"
export OLDARCHFLAGS=$ARCHFLAGS
export ARCHFLAGS+="-arch arm64"
python -m build --wheel
export PLAT="x86_64"
export _PYTHON_HOST_PLATFORM="macosx-11.0-x86_64"
export CFLAGS+=" -arch x86_64"
export CXXFLAGS+=" -arch x86_64"
export ARCHFLAGS=$OLDARCHFLAGS
export ARCHFLAGS+=" -arch x86_64"
export CPPFLAGS+=" -arch x86_64"
export LDFLAGS+=" -arch x86_64"
python -m build --wheel
- name: Delocate to bundle dynamic libs
run: |
pip install delocate
delocate-wheel -v dist/msprime-*arm64.whl
delocate-wheel -v dist/msprime-*x86_64.whl
- name: Upload Wheels
uses: actions/upload-artifact@v4
with:
name: osx-wheel-${{ matrix.python }}
path: dist
manylinux:
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v4
with:
submodules: true
- name: Set up Python 3.9
uses: actions/setup-python@v5
with:
python-version: 3.9
- name: Build sdist
shell: bash
run: |
pip install --upgrade pip build
python -m build --sdist
- name: Upload sdist
uses: actions/upload-artifact@v4
with:
name: sdist
path: dist
- name: Build wheels in docker
shell: bash
run: |
docker run --rm -v `pwd`:/project -w /project quay.io/pypa/manylinux2014_x86_64 bash .github/workflows/docker/buildwheel.sh
- name: Upload Wheels
uses: actions/upload-artifact@v4
with:
name: linux-wheels
path: dist/wheelhouse
OSX-test:
needs: ['OSX']
runs-on: macos-latest
strategy:
matrix:
python: [3.9, "3.10", 3.11, 3.12]
steps:
- name: Download wheels
uses: actions/download-artifact@v4
with:
name: osx-wheel-${{ matrix.python }}
- name: Set up Python ${{ matrix.python }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python }}
- name: Install wheel and test
run: |
python -VV
# Install the local wheel
pip install numpy newick>=1.3.0 tskit>=0.5.2 demes>=0.2
pip install msprime --no-index --only-binary msprime -f .
python -c "import msprime"
msp simulate 10 tmp.trees
tskit info tmp.trees
tskit provenances tmp.trees
manylinux-test:
runs-on: ubuntu-latest
needs: ['manylinux']
strategy:
matrix:
python: [3.9, "3.10", 3.11, 3.12]
steps:
- name: Download wheels
uses: actions/download-artifact@v4
with:
name: linux-wheels
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python }}
- name: Install wheel and test
run: |
python -VV
# Install the local wheel
pip install msprime
pip uninstall --yes msprime
pip install msprime --no-index --only-binary msprime -f .
python -c "import msprime"
msp simulate 10 tmp.trees
tskit info tmp.trees
tskit provenances tmp.trees
PyPI_Upload:
runs-on: ubuntu-latest
environment: release
needs: ['OSX-test', 'manylinux-test']
permissions:
id-token: write
steps:
- name: Download all
uses: actions/download-artifact@v4
- name: Move to dist
run: |
mkdir dist
cp */*.{whl,gz} dist/.
- name: Publish distribution to Test PyPI
if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags')
uses: pypa/gh-action-pypi-publish@release/v1
with:
repository_url: https://test.pypi.org/legacy/
- name: Publish distribution to PRODUCTION PyPI
if: github.event_name == 'release'
uses: pypa/gh-action-pypi-publish@release/v1