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| # CHANGELOG | ||
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| ## v0.9.1 (2024-10-16) | ||
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| ### Chores | ||
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| * chore: fix build process ([`a0b7907`](https://github.com/tsenoner/ProtSpace/commit/a0b79077a6d805f7409fa754dd0b988f26809901)) | ||
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| ### Fixes | ||
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| * fix: correct version ([`9f03843`](https://github.com/tsenoner/ProtSpace/commit/9f038436ef965f430e93e31e3714d372c6fbf868)) | ||
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| ### Unknown | ||
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| * fix invalid yaml | ||
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| fix: build process ([`16845ce`](https://github.com/tsenoner/ProtSpace/commit/16845ce0e98d6a675dd3992acee3402782dbbbca)) | ||
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| * fix pypi push action | ||
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| fix: build process ([`5990982`](https://github.com/tsenoner/ProtSpace/commit/5990982a98ef01bf45b116531cb922a6a1acb280)) | ||
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| * add python semantic release | ||
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| chore: Add python build and push ([`ff07c25`](https://github.com/tsenoner/ProtSpace/commit/ff07c256490078ba0b86841b17b48251283043e7)) | ||
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| * Merge branch 'main' of github.com:tsenoner/ProtSpace ([`6d1a642`](https://github.com/tsenoner/ProtSpace/commit/6d1a642732e5355d949df60c439fce21ec10c210)) | ||
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| ## v0.9.0 (2024-10-16) | ||
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| ### Unknown | ||
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| * ignore SyntaxWarning of biopython ([`30e609b`](https://github.com/tsenoner/ProtSpace/commit/30e609bc18d16657be70d661995295676999baf1)) | ||
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| * Only build on tags ([`e54e0f4`](https://github.com/tsenoner/ProtSpace/commit/e54e0f48150f49d25cfd9cdf5a4f572ab4decda1)) | ||
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| * Docker build only on src changes ([`3060aa1`](https://github.com/tsenoner/ProtSpace/commit/3060aa102a813c57467bdc119f4f05514a958e96)) | ||
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| * Create jekyll-gh-pages.yml ([`0811591`](https://github.com/tsenoner/ProtSpace/commit/0811591d04edd9b7bfde426073d04b044e0885db)) | ||
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| * Version bump ([`afa23fc`](https://github.com/tsenoner/ProtSpace/commit/afa23fced657b53a5be453eea0f63f459980dd43)) | ||
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| * Update README.md ([`790d6e7`](https://github.com/tsenoner/ProtSpace/commit/790d6e776b57d3c6cb71a6456d8f4dd5f4cf7840)) | ||
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| * Updated README.md ([`ec4789b`](https://github.com/tsenoner/ProtSpace/commit/ec4789b4b8494581d4a91dd411c938f7c386e264)) | ||
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| * Version Bump ([`2772760`](https://github.com/tsenoner/ProtSpace/commit/2772760a58b519f5722b0f1fb711dfd56322ab78)) | ||
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| * Merge branch 'main' of github.com:tsenoner/ProtSpace ([`ee5e82e`](https://github.com/tsenoner/ProtSpace/commit/ee5e82e46a35da217fc19b70c3e3c06ea6e4e3a4)) | ||
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| * Remove unneccary __init__.py lines ([`a594d9e`](https://github.com/tsenoner/ProtSpace/commit/a594d9efe6d0811e69c31340d4268141ff4ceb08)) | ||
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| * Updated dependencies ([`ba93e08`](https://github.com/tsenoner/ProtSpace/commit/ba93e08334aeb5ca2d422e266b21f741242660c2)) | ||
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| * Add commandline parsing ([`5a6fc36`](https://github.com/tsenoner/ProtSpace/commit/5a6fc3636fa74f8b0b7e1f20f4f1e19131ec4aff)) | ||
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| * Add render deploy hook ([`7e12a48`](https://github.com/tsenoner/ProtSpace/commit/7e12a48cf36b37b54ef03d8b40e8218e358496c4)) | ||
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| * Merge pull request #4 from tsenoner/f-transition-uv | ||
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| Add data to docker image ([`f8b475d`](https://github.com/tsenoner/ProtSpace/commit/f8b475da9dc36d8850d4dc6e7db1d1958b806301)) | ||
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| * Add data to docker image ([`04adb5a`](https://github.com/tsenoner/ProtSpace/commit/04adb5a51a3301f478b854045b398d36197fbd14)) | ||
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| * Merge pull request #3 from tsenoner/f-transition-uv | ||
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| F transition uv ([`628741d`](https://github.com/tsenoner/ProtSpace/commit/628741ddbca0f4e0d5ea759f21359b26d3e81ddf)) | ||
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| * Fix license ([`2e874b0`](https://github.com/tsenoner/ProtSpace/commit/2e874b0926d8eac9b73ea4b81151bbe0ee5167f0)) | ||
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| * Add Github Action to build image ([`9a1e79c`](https://github.com/tsenoner/ProtSpace/commit/9a1e79c8d4ed5ddcd3866e76fd6953aed09a0270)) | ||
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| * Add relevant labels ([`35824b4`](https://github.com/tsenoner/ProtSpace/commit/35824b4efdfd527f74dbb1de75ccbdff68d0ccf2)) | ||
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| * fix docker deployment ([`e0c4ef5`](https://github.com/tsenoner/ProtSpace/commit/e0c4ef51816bfad8ffc67eba1055ffcc30c255aa)) | ||
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| * Fix import in main from util to config ([`adf8c63`](https://github.com/tsenoner/ProtSpace/commit/adf8c63710eb3cfcbbad8696035f8abfe995c4eb)) | ||
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| * Update examples ([`0949e7d`](https://github.com/tsenoner/ProtSpace/commit/0949e7d3e777befa7c882acc6057878772f0fdf0)) | ||
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| * Merge branch 'main' into f-transition-uv ([`2ba8da5`](https://github.com/tsenoner/ProtSpace/commit/2ba8da55b500a0af7ad1bf5ab0a68525e339d4bd)) | ||
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| * Correct deployment path name ([`7447ff9`](https://github.com/tsenoner/ProtSpace/commit/7447ff95e831a1b50c7b3cc256895e9e661e9de5)) | ||
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| * Update Example images ([`796f616`](https://github.com/tsenoner/ProtSpace/commit/796f6168ec6888e9babd9057d559d2c3881153b2)) | ||
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| * Update Pla2g2 example data ([`3d37cd7`](https://github.com/tsenoner/ProtSpace/commit/3d37cd71a46f6b956d99d5f53090c004f75c45d6)) | ||
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| * Change example data to Pla2g2 ([`ecdb19c`](https://github.com/tsenoner/ProtSpace/commit/ecdb19c27f20cc86ceea476acb01949bb3319df1)) | ||
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| * Add command ([`c7d6702`](https://github.com/tsenoner/ProtSpace/commit/c7d6702abcb0de7beb0b31607996835d62d7a1bb)) | ||
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| * Add dotenv ([`f859cb0`](https://github.com/tsenoner/ProtSpace/commit/f859cb094330d4d63445ae9da8067ebd8372001e)) | ||
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| * Fix src layout ([`dde1322`](https://github.com/tsenoner/ProtSpace/commit/dde13222626f3623a7eecd3a214278c5e81a1cf4)) | ||
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| * Update render config ([`36f66fb`](https://github.com/tsenoner/ProtSpace/commit/36f66fbf00821a945db062d2fa6257cf9fa114a6)) | ||
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| * Add dockerfile ([`d99d196`](https://github.com/tsenoner/ProtSpace/commit/d99d19639d5eec18d14bc4c941ac5d1b9c76d08b)) | ||
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| * Switch to Env variables for more dynamic config ([`a4cd684`](https://github.com/tsenoner/ProtSpace/commit/a4cd68469b28aa7273501e6c079501614eb28df5)) | ||
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| * Change uttils to config ([`b8d1d45`](https://github.com/tsenoner/ProtSpace/commit/b8d1d456a2688ca904f57fdf97a94c6d41b769c5)) | ||
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| * Transition to uv ([`46e1134`](https://github.com/tsenoner/ProtSpace/commit/46e113406baa0df09144de1174c538162d963bd2)) | ||
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| * Move for easier packaging ([`ef4f471`](https://github.com/tsenoner/ProtSpace/commit/ef4f471e0da274efc55540e3447698271b3d401d)) | ||
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| * Rename to scripts ([`188233e`](https://github.com/tsenoner/ProtSpace/commit/188233ea60e9749a8828c7847af86c97273a23ff)) | ||
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| * Update LA image + add ProtSpace workflow ([`7e86b00`](https://github.com/tsenoner/ProtSpace/commit/7e86b00735b60561fadf98e18eeacf37ef0142a3)) | ||
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| * Remove old example file in base ([`494e510`](https://github.com/tsenoner/ProtSpace/commit/494e5100f437977eda6b890ee8d3a2b8aa2b6d45)) | ||
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| * Update merge script for manuscript ([`89197b2`](https://github.com/tsenoner/ProtSpace/commit/89197b29c175968a59b0ecf7ab9f7fbf9decadcf)) | ||
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| * Add examples for pla2g2 and homo sapiens ([`9272b2c`](https://github.com/tsenoner/ProtSpace/commit/9272b2c8deda326d328b1745fe20522618105f10)) | ||
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| * Add homo sapiens data ([`91313e1`](https://github.com/tsenoner/ProtSpace/commit/91313e1b295869829cadcab6a145467969d2f78f)) | ||
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| * Remove pdb directories from Git tracking ([`8650643`](https://github.com/tsenoner/ProtSpace/commit/8650643206a55544123e2655d7bf8c612efa650a)) | ||
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| * remove PDB by default in wsgi.py for gunicorn ([`007fb81`](https://github.com/tsenoner/ProtSpace/commit/007fb81589ae7e54efc2911659f0527337ea2590)) | ||
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| * Fix broaken marker style update ([`da05e81`](https://github.com/tsenoner/ProtSpace/commit/da05e8194fba37f47bbeb8af3070e2ee00e8b2a9)) | ||
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| * Implement PDB viewer and zip upload ([`c642610`](https://github.com/tsenoner/ProtSpace/commit/c642610763d22d7c1b2c36c1c939ccc011396c43)) | ||
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| * Fix multiple worker run with gunicorn using dcc.Store ([`6163407`](https://github.com/tsenoner/ProtSpace/commit/6163407f8396e70a5fcb02154f2757edc41fa5f6)) | ||
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| * let render only install the needed dependencies ([`a66a3c9`](https://github.com/tsenoner/ProtSpace/commit/a66a3c9e744a18c70c34cb8913e8106eb9210625)) | ||
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| * move wsgi to protspace ([`bddf8f5`](https://github.com/tsenoner/ProtSpace/commit/bddf8f50db66efb14bc0e78d60d2d5f35d4e408a)) | ||
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| * add __init__.py to script ([`2a93aa2`](https://github.com/tsenoner/ProtSpace/commit/2a93aa277713ed51d767ba0049484d1a88359694)) | ||
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| * Move render.yaml to base ([`02dc91e`](https://github.com/tsenoner/ProtSpace/commit/02dc91ec15d3c81ec989ed1de1ccf17350727e7e)) | ||
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| * Set everything up for render ([`baede79`](https://github.com/tsenoner/ProtSpace/commit/baede793c37c5986b77441bec00a9936d750398b)) | ||
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| * add build.sh for render web service ([`de96eec`](https://github.com/tsenoner/ProtSpace/commit/de96eec5f02f57d291b22ee2461038d8bfb28af4)) | ||
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| * Add Pla2g2 dataset ([`cbfbea2`](https://github.com/tsenoner/ProtSpace/commit/cbfbea227d39de39fe9a75ad9a652fd6e196ff85)) | ||
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| * Extend script to add colors and shapes ([`4112d84`](https://github.com/tsenoner/ProtSpace/commit/4112d8454d969790bb3cd2fd9f9c048758be99a5)) | ||
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| * Allow to append embedding spaces to existing JSON ([`4d3ac4e`](https://github.com/tsenoner/ProtSpace/commit/4d3ac4e7c71f5010a43ce5d4570e2b939576b37d)) | ||
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| * Rename config to utils ([`d2a5e3e`](https://github.com/tsenoner/ProtSpace/commit/d2a5e3efc2e775231102631d3ddea592ee8ad360)) | ||
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| * Update examples ([`a5615bd`](https://github.com/tsenoner/ProtSpace/commit/a5615bd63cc4ca695e8255bf412856ce21b30190)) | ||
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| * Update examples ([`a252b54`](https://github.com/tsenoner/ProtSpace/commit/a252b542c7724814294dfbb7edc577be288ecb1d)) | ||
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| * Add settings, download, and upload JSON button ([`c5989aa`](https://github.com/tsenoner/ProtSpace/commit/c5989aad396239de3e69143822cc68407e212e9b)) | ||
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| * Update ProtSpace according to new JsonReader ([`4a69081`](https://github.com/tsenoner/ProtSpace/commit/4a69081d345a2cee2064857e06776b8a1046538b)) | ||
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| * JsonReader updates marker color and shape ([`61c7c16`](https://github.com/tsenoner/ProtSpace/commit/61c7c165cf4f572df0346b287e2cf410450dcb94)) | ||
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| * Move color and marker shape update to callbacks ([`753b1dc`](https://github.com/tsenoner/ProtSpace/commit/753b1dc9ca0337bc9830ba4f1bcb1cba59040194)) | ||
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| * Legend in saved image is proportional to height ([`e2c9619`](https://github.com/tsenoner/ProtSpace/commit/e2c961997546cdf30d25106976bab5a1b842a9fa)) | ||
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| * Add script to generate h_sapiens manuscript img ([`a33cff3`](https://github.com/tsenoner/ProtSpace/commit/a33cff37e3f11d63da5e1f74523b4229a2cff62f)) | ||
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| * Update examples ([`2a6e93b`](https://github.com/tsenoner/ProtSpace/commit/2a6e93b18f8b43843eb47f9293d646bfa7a131f8)) | ||
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| * Handle <NAN> colors properly ([`2b80768`](https://github.com/tsenoner/ProtSpace/commit/2b80768debffd21f8e69c42b23ad592dd8392615)) | ||
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| * update the LA embedding creating script ([`491ec4b`](https://github.com/tsenoner/ProtSpace/commit/491ec4b45158308622acaace820de8dc5286d933)) | ||
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| * add script to download folcomp compressed structures ([`144d204`](https://github.com/tsenoner/ProtSpace/commit/144d20494c9bd480cc8c9b77932bb3b374801927)) | ||
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| * add script to create LA embeddings ([`e70cc34`](https://github.com/tsenoner/ProtSpace/commit/e70cc344cb232f14e03d8ccbc46b833279e113cc)) | ||
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| * add examples for both hex and rbga colors ([`a38fbbc`](https://github.com/tsenoner/ProtSpace/commit/a38fbbc7e2662533692f7a0eb3f52b86d1abc04d)) | ||
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| * Allow for costumized colors ([`331331a`](https://github.com/tsenoner/ProtSpace/commit/331331a668538964e24b5058d35e89b3bf6912cb)) | ||
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| * Make the info key in the projections optional ([`23b74cc`](https://github.com/tsenoner/ProtSpace/commit/23b74cc639eb6da90fafbbde09375dd293ad442f)) | ||
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| * Remove old notebook directory ([`af9b5d1`](https://github.com/tsenoner/ProtSpace/commit/af9b5d1e8e17614a2b6226ef44b7fd65f5e3d187)) | ||
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| * Add notebook to explore ProtSpace w/o installation ([`f3eed86`](https://github.com/tsenoner/ProtSpace/commit/f3eed860d307841629e45b5ab7b7b0c34ac2cc4a)) | ||
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| * Have no output when running the app interactivelly | ||
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| E.g. when running in a jupyter notebook or Google colab ([`821d22d`](https://github.com/tsenoner/ProtSpace/commit/821d22dd43244eeb9a5b99878189c5fbac42184c)) | ||
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| * Add some usecase examples ([`f21a414`](https://github.com/tsenoner/ProtSpace/commit/f21a414a6c7c39afde7cf2de403f728d6477e0e3)) | ||
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| * Restructure app for better mantainability ([`f8c845a`](https://github.com/tsenoner/ProtSpace/commit/f8c845ac280ea89037889420ee0e05fdd7f1e9e9)) | ||
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| * add independent image generation ([`006726b`](https://github.com/tsenoner/ProtSpace/commit/006726bdfabb57296e967f1e14d59ddcfd168154)) | ||
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| * Update 3FTx.html file ([`0ce9693`](https://github.com/tsenoner/ProtSpace/commit/0ce9693590081f392e7618327839910b6aa5015f)) | ||
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| * Correct path to 3FTx.html in README.md ([`39e7091`](https://github.com/tsenoner/ProtSpace/commit/39e7091230d5ef0b75408268b89920e732fe71ea)) | ||
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| * Correct path to 3FTx.html in README.md ([`2692f53`](https://github.com/tsenoner/ProtSpace/commit/2692f53438075580a9d5cdadf054ee4806c18a74)) | ||
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| * Add example output to the README.md ([`474c63b`](https://github.com/tsenoner/ProtSpace/commit/474c63ba3c5309cc668d612ec98c2e50d7af2b89)) | ||
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| * Update README.md ([`f32de52`](https://github.com/tsenoner/ProtSpace/commit/f32de5222c2f82e1b2efd11f4752344e9193b434)) | ||
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| * Add structure protein display next to scatter plot ([`1af3ef1`](https://github.com/tsenoner/ProtSpace/commit/1af3ef161885c24f11130a3c38e28a50ee7ebc72)) | ||
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| * Update Layout, add download and search functionality ([`8300381`](https://github.com/tsenoner/ProtSpace/commit/83003811052e37193e5a7951261f954b13e45866)) | ||
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| * Restructure app and only keep what is necessary ([`d4aa4df`](https://github.com/tsenoner/ProtSpace/commit/d4aa4dffee8679bbbd826abcc6c87c53a712a8c4)) | ||
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| * Add basic version of the main app to visualize protein embeddings ([`b448525`](https://github.com/tsenoner/ProtSpace/commit/b448525c08c2f31238ef10594a173065524b3eed)) | ||
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| * Add script to load JSON file for the app to handle ([`eb3dc84`](https://github.com/tsenoner/ProtSpace/commit/eb3dc84391b3effe06124d18c7a653ac01dd494f)) | ||
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| * Prepare data to a JSON format to be visulaized ([`2b50bc7`](https://github.com/tsenoner/ProtSpace/commit/2b50bc737f8baa8d4ce2acf0f1ba4706363c5110)) | ||
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| * Create LICENSE ([`8af8607`](https://github.com/tsenoner/ProtSpace/commit/8af8607d0f15f24056be95c82eae23aa82d16d5a)) | ||
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| * Directory structure ([`15dd9e4`](https://github.com/tsenoner/ProtSpace/commit/15dd9e43f521683710e0bb8f716fac8d4766409b)) | ||
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| * Remove .DS_Store and add it to .gitignore ([`0def325`](https://github.com/tsenoner/ProtSpace/commit/0def3259b892eaed3b157a8ed0244939a3527da1)) | ||
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| * Remove .DS_Store and add it to .gitignore ([`be45406`](https://github.com/tsenoner/ProtSpace/commit/be454061eafab56150087dcf1459ce149f13fd81)) | ||
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| * Initial commit ([`51e0d75`](https://github.com/tsenoner/ProtSpace/commit/51e0d7533b5b976a4d08fef219a35ce1ce9ae078)) |
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| [project] | ||
| name = "protspace" | ||
| version = "0.9.0" | ||
| version = "0.9.1" | ||
| description = "A visualisation tool for protein embeddings from pLMs" | ||
| authors = [{ name = "Tobias Senoner", email = "[email protected]" }] | ||
| readme = "README.md" | ||
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