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update profiles
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treangen authored Sep 4, 2024
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2 changes: 1 addition & 1 deletion _pages/profiles.md
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Expand Up @@ -5,7 +5,7 @@ title: people
description: Treangen lab members
nav: true
nav_order: 1
display_categories: [developers, phd students, postdocs, research scientists, undergrads]
display_categories: [PhD students, Scientists, Software Engineers, UG Students]
horizontal: true
---

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2 changes: 1 addition & 1 deletion _profiles/apatel.md
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Expand Up @@ -4,7 +4,7 @@ title: Anika Patel
description: Undergraduate
img: assets/img/apatel.jpg
importance: 1
category: undergrads
category: UG Students
related_publications: false
---

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4 changes: 2 additions & 2 deletions _profiles/bkille.md
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Expand Up @@ -4,10 +4,10 @@ title: Bryce Kille
description: 4th Year Ph.D. student
img: assets/img/bkille.jpg
importance: 6
category: phd students
category: PhD students
related_publications: true
---

Bryce (4th year PhD student, Computer Science) received his MS in Bioinformatics and BS in Computer Science + Chemistry from the University of Illinois at Urbana-Champaign. As an undergraduate, he worked at Dow Agrosciences in both the computational biology and cheminformatics groups. His projects included developing software for phylogeny analysis and creating models for compound activity prediction. During his Master’s program, Bryce worked in a biochemistry lab developing software for genome mining as well as a on research project for creating bit-wise algorithms for the C++ STL. One of his main interests is casting biological and chemical problems into theoretical computer science questions.
Bryce (4th year PhD student, Computer Science) received his MS in Bioinformatics and BS in Computer Science + Chemistry from the University of Illinois at Urbana-Champaign. As an undergraduate, he worked at Dow Agrosciences in both the computational biology and cheminformatics groups. His projects included developing software for phylogeny analysis and creating models for compound activity prediction. During his Master’s program, Bryce worked in a biochemistry lab developing software for genome mining as well as a on research project for creating bit-wise algorithms for the C++ STL. One of his main interests is casting biological and chemical problems into theoretical computer science questions. Bryce is currently a NLM Biomedical Informatics predoctoral fellow (NIH grant T15LM007093).

A few of Bryce's recent publications: {% cite kille2022multiple kille2023minmers kille2024parsnp %}.
2 changes: 1 addition & 1 deletion _profiles/dongwei.md
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Expand Up @@ -4,7 +4,7 @@ title: Dongwei Li
description: 1st Year Ph.D. student
img: assets/img/dongwei.jpg
importance: 1
category: phd students
category: PhD students
related_publications: true
---

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2 changes: 1 addition & 1 deletion _profiles/ehuang.md
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Expand Up @@ -4,7 +4,7 @@ title: Eddy Huang
description: 3rd Year Ph.D. student
img: assets/img/ehuang.jpg
importance: 4
category: phd students
category: PhD students
related_publications: true
---

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2 changes: 1 addition & 1 deletion _profiles/fquinanta.md
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Expand Up @@ -4,7 +4,7 @@ title: Felix Quintana
description: 3rd Year Ph.D. student
img: assets/img/fquintana.jpg
importance: 5
category: phd students
category: PhD students
related_publications: true
---

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6 changes: 3 additions & 3 deletions _profiles/mbarnett.md
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---
layout: page
title: R. Matt Barnett
description: Senior Research Programmer
description: Software Engineer,
img: assets/img/mbarnett.jpg
importance: 1
category: developers
category: Software Engineers
related_publications: true
---

Matt (Senior Research Programmer) received his Undergraduate Degree in Computer Science From Rice University. He provides professional software engineering support to multiple research projects in the Treangen lab.
Matt (Software Engineer) received his Undergraduate Degree in Computer Science From Rice University. He provides professional software engineering support to multiple research projects in the Treangen lab, previously contributing to [Harvest Variants](www.harvestvariants.info) and variant calling research endeavors specific to Illumina and Oxford Nanopore Sequencing.


6 changes: 3 additions & 3 deletions _profiles/mnute.md
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---
layout: page
title: Dr. Michael Nute
description: Research Scientist
description: Research Scientist, Department of Computer Science, Rice University
img: assets/img/mnute.jpg
importance: 1
category: research scientists
category: Scientists
related_publications: true
---

Mike (Research Scientist) received his Ph.D. in Statistics in 2019 from the University of Illinois at Urbana-Champaign where he was advised by Dr. Tandy Warnow in the Department of Computer Science and worked on algorithms related to multiple sequence alignment and phylogenetic tree estimation, in particular applying these methods to studying microbial communities. He was co-advised by Dr. Rebecca Stumpf in the Department of Anthropology where he and other lab members developed novel methods to compare the microbiomes of human and non-human primates. His research interest is in discovering a new applications for our understanding of microbial communities.
Mike (Research Scientist) received his Ph.D. in Statistics in 2019 from the University of Illinois at Urbana-Champaign where he was advised by Dr. Tandy Warnow in the Department of Computer Science and worked on algorithms related to multiple sequence alignment and phylogenetic tree estimation, in particular applying these methods to studying microbial communities. He was co-advised by Dr. Rebecca Stumpf in the Department of Anthropology where he and other lab members developed novel methods to compare the microbiomes of human and non-human primates. Previously, Mike was a [NLM Biomedical Informatics postdoctoral fellow](https://www.gulfcoastconsortia.org/home/training/bmi-nlm/), funded by NIH grant T15LM007093. His research interest is in discovering a new applications for our understanding of microbial communities and metagenomic analysis. Mike has provided leadership and guidance on numerous software tools our lab has developed, including: Bakdrive, Emu, Komb, Lemur, Parsnp 2.0, SeqScreen-Nano, and more.

4 changes: 2 additions & 2 deletions _profiles/nkokroko.md
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---
layout: page
title: Natalie Kokroko
description: 2nd Year Ph.D. student
description: 2nd Year Computer Science Ph.D. student, interested in microbiome analysis and metagenomics.
img: assets/img/nkokroko.jpg
importance: 3
category: phd students
category: PhD students
related_publications: true
---

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4 changes: 2 additions & 2 deletions _profiles/rdoughty.md
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---
layout: page
title: Ryan Doughty
description: 1st Year Ph.D. student
description: 1st Year Compter Science Ph.D. student, interested in metagenomics and virome analysis.
img: assets/img/rdoughty.jpg
importance: 2
category: phd students
category: PhD students
related_publications: true
---

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4 changes: 2 additions & 2 deletions _profiles/xwang.md
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---
layout: page
title: Michael X. Wang
description: 6th Year Ph.D. student
description: 6th Year Bioengineering Ph.D. student. Lead developer of Olivar.
img: assets/img/xwang.jpg
importance: 7
category: phd students
category: PhD students
related_publications: true
---

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