refactor: CMakeLists cleanup and subdirs for header files (#394) #1296

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Job	Run time
build (debug)	5m 8s
checkstyle	59s
build (release)	4m 55s
e2e (debug)	15m 37s
integration (debug)	4m 44s
e2e (release)	18m 57s
integration (release)	4m 12s
conclude	4s
slack	11s
	54m 47s