Merge pull request #1 from tractometry/new_release

New release

.github/workflows/docbuild.yml

@@ -6,9 +6,8 @@ jobs:
   build:
     runs-on: ubuntu-latest
     strategy:
-      max-parallel: 4
       matrix:
-        python-version: ["3.9", "3.10", "3.11"]
+        python-version: ["3.11"]
 
     steps:
     - name: Checkout repo
@@ -31,7 +30,7 @@ jobs:
         cd docs
         make html
     - name: Upload docs
-      uses: actions/upload-artifact@v1
+      uses: actions/upload-artifact@v4
       with:
         name: docs
         path: docs/build/html

.github/workflows/publish-to-test-pypi.yml

@@ -6,34 +6,34 @@ jobs:
     name: Build and publish Python 🐍 distributions 📦 to PyPI and TestPyPI
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@master
-    - name: Set up Python 3.9
+    - uses: actions/checkout@v4
+    - name: Set up Python 3.11
       uses: actions/setup-python@v1
       with:
-        python-version: 3.9
-    - name: Install pypa/build
+        python-version: 3.11
+    - name: Install pep517
       run: >-
         python -m
         pip install
-        build
+        pep517
         --user
     - name: Build a binary wheel and a source tarball
       run: >-
         python -m
-        build
-        --sdist
-        --wheel
-        --outdir dist/
+        pep517.build
+        --source
+        --binary
+        --out-dir dist/
         .
     - name: Publish distribution 📦 to Test PyPI
-      uses: pypa/gh-action-pypi-publish@master
+      uses: pypa/gh-action-pypi-publish@release/v1
       with:
         user: __token__
         password: ${{ secrets.test_pypi_password }}
-        repository_url: https://test.pypi.org/legacy/
+        repository-url: https://test.pypi.org/legacy/
     - name: Publish distribution 📦 to PyPI
       if: startsWith(github.event.ref, 'refs/tags')
-      uses: pypa/gh-action-pypi-publish@master
+      uses: pypa/gh-action-pypi-publish@release/v1
       with:
         user: __token__
-        password: ${{ secrets.pypi_password }}
+        password: ${{ secrets.pypi_password }}

.github/workflows/test.yml

@@ -9,7 +9,7 @@ jobs:
     strategy:
       max-parallel: 4
       matrix:
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.9", "3.10", "3.11"]
         nibabel-pre: [true, false]
 
     steps:

gpu_docker/Dockerfile

@@ -29,7 +29,7 @@ ENV LD_LIBRARY_PATH /opt/anaconda/lib:${LD_LIBRARY_PATH}
 RUN pip install numpy scipy cython nibabel dipy tqdm fslpy
 
 # clone pyAFQ GPUStreamlines
-RUN git clone https://github.com/yeatmanlab/pyAFQ.git /opt/pyAFQ
+RUN git clone https://github.com/tractometry/pyAFQ.git /opt/pyAFQ
 RUN cd /opt/pyAFQ && git reset --hard ${COMMIT}
 RUN git clone --recursive  -b csaodf https://github.com/dipy/GPUStreamlines /opt/GPUStreamlines
 

pyafq_docker/Dockerfile

@@ -8,7 +8,7 @@ FROM python:3.8
 ARG COMMIT
 
 # Install pyAFQ
-RUN pip install --no-cache-dir git+https://github.com/yeatmanlab/pyAFQ.git@${COMMIT}
+RUN pip install --no-cache-dir git+https://github.com/tractometry/pyAFQ.git@${COMMIT}
 RUN pip install fslpy
 RUN pyAFQ download