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TrackMate v7.6.0:

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@tinevez tinevez released this 26 Feb 15:13
· 318 commits to master since this release
TrackMate-7.6.0
477d55d

This release contains mainly small bugfixes and one new action.

New features

Automatic renaming of spots.

There is now an action that rename spots in batch based on specific rules.

spot-renamer-01

Three simple rules are implemented for now.
spot-renamer-02

The first one simply copies the track name to all its spots name. (You can edit the track name in the track table or in TrackScheme.)
spot-renamer-03

The second one is based on the lineage. After a division (or 'split' events), the daughter objects will receive the name of the parent object, with 'a', b', etc. suffixed to the name. The letters appended ('a', 'b', ...) are assigned by taking the X position of the sibling objects (the leftmost one receive 'a', etc).
spot-renamer-04

The third one is derived from the second one. On top of appending with a letter reflecting the hierarchy, an integer is suffixed that represent the spot position in the branch. For instance the first spot in the branch could be named Track_12.a.1, the second 'Track_12.a.2` etc.
spot-renamer-05

This will be especially useful when post-processing tracking results in specific track analysis software.

Bugfixes

  • Do not crash when running global detectors on a subset of time-points.
  • Fix incorrect channel being used in the Spot Gaussian fitter action.
  • Fix the track name comparison crashing with empty track names.
  • Fix typos in feature names:
    • CONFINMENT_RATIO fixed in CONFINEMENT_RATIO
    • MANUAL_EGE_COLOR fixed in MANUAL_EDGE_COLOR
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