A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
ProteinInteractionFinder (PIF) is a Java 11 library for determining interatomic interactions in protein structures, obtained from PDB (Protein Data Bank) files.
Diffusion Kernel-based Graph Node Clustering for Protein Domain Assignment
Automated generation of immunogenic peptides from protein structures and molecular docking analysis using AlphaFold2 and AutodockVina.
Identify residue contacts shared across all or most protein structures of a give protein family
Find all PDBs associated with a UniProt entry.
Yale Gradute School module CBB752 final group project by Jiaqi Li, Keyi Li, and Anna Su.
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