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Simulate genealogical trees and genomic sequence data using population genetic models

python genomics genetics simulation trees coalescent tskit msprime

Genotype likelihood simulator for VCF/BCF files

simulation vcf genotype-likelihoods vcf-files tskit msprime

Estimating Population Genetic Parameters Using Neural Networks and Genetic Simulations

cnn population-genetics prediction-model msprime

Simulating and estimating the effect of gene transfer on bacterial pangenomes.

bioinformatics thesis-project tskit msprime

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