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vilmacanfjorden edited this page Feb 11, 2019 · 9 revisions

This is a pipeline that performs bioinformatic analysis including SNP calling, effect prediction and GFF parsing of FASTQ or BAM files.


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Description Manual Examples
pipeline flowchart 5 screen shot 2019-02-11 at 12 04 22 screen shot 2019-02-11 at 12 05 43
Description Manual Examples
Describes each step of the pipeline and the utility scripts How to use the program, flags and options Output examples and plots when using different input files and flags

Pipeline

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