Update needletail to v0.6.0, enable gz compression #118
tmaklinAnnotations
1 error and 11 warnings
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Build and test Rust code (stable)
Process completed with exit code 101.
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this expression creates a reference which is immediately dereferenced by the compiler:
src/cli/main.rs#L193
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/cli/main.rs:193:67
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193 | ... res.append(&mut kbo::find(&seq.reverse_complement(), &sbwt, &lcs, derand_opts.clone()).iter().map(|x| (x.0, x.1, '-', x.2 + x.3, x....
| ^^^^ help: change this to: `lcs`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
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this expression creates a reference which is immediately dereferenced by the compiler:
src/cli/main.rs#L193
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/cli/main.rs:193:60
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193 | ... res.append(&mut kbo::find(&seq.reverse_complement(), &sbwt, &lcs, derand_opts.clone()).iter().map(|x| (x.0, x.1, '-', x.2 + x.3, x....
| ^^^^^ help: change this to: `sbwt`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
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this expression creates a reference which is immediately dereferenced by the compiler:
src/cli/main.rs#L190
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/cli/main.rs:190:36
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190 | ... res = kbo::find(&seq, &sbwt, &lcs, derand_opts.clone()).iter().map(|x| (x.0, x.1, '+', x.2 + x.3, x.3, ref_contig.clone(), query_co...
| ^^^^ help: change this to: `lcs`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
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this expression creates a reference which is immediately dereferenced by the compiler:
src/cli/main.rs#L190
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/cli/main.rs:190:29
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190 | ... res = kbo::find(&seq, &sbwt, &lcs, derand_opts.clone()).iter().map(|x| (x.0, x.1, '+', x.2 + x.3, x.3, ref_contig.clone(), query_co...
| ^^^^^ help: change this to: `sbwt`
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
= note: `#[warn(clippy::needless_borrow)]` on by default
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doc list item without indentation:
src/lib.rs#L29
warning: doc list item without indentation
--> src/lib.rs:29:5
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29 | //! map](https://docs.rs/ska/latest/ska/#ska-map).
| ^
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= help: if this is supposed to be its own paragraph, add a blank line
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#doc_lazy_continuation
help: indent this line
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29 | //! map](https://docs.rs/ska/latest/ska/#ska-map).
| ++
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doc list item without indentation:
src/lib.rs#L28
warning: doc list item without indentation
--> src/lib.rs:28:5
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28 | //! [snippy](https://github.com/tseemann/snippy) and [ska
| ^
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= help: if this is supposed to be its own paragraph, add a blank line
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#doc_lazy_continuation
help: indent this line
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28 | //! [snippy](https://github.com/tseemann/snippy) and [ska
| ++
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doc list item without indentation:
src/lib.rs#L27
warning: doc list item without indentation
--> src/lib.rs:27:5
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27 | //! the reference. Map solves the same problem as
| ^
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= help: if this is supposed to be its own paragraph, add a blank line
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#doc_lazy_continuation
help: indent this line
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27 | //! the reference. Map solves the same problem as
| ++
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doc list item without indentation:
src/lib.rs#L26
warning: doc list item without indentation
--> src/lib.rs:26:5
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26 | //! sequence, and reports the nucleotide sequence of the alignment relative to
| ^
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= help: if this is supposed to be its own paragraph, add a blank line
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#doc_lazy_continuation
help: indent this line
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26 | //! sequence, and reports the nucleotide sequence of the alignment relative to
| ++
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doc list item without indentation:
src/lib.rs#L24
warning: doc list item without indentation
--> src/lib.rs:24:5
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24 | //! [blast](https://blast.ncbi.nlm.nih.gov/Blast.cgi).
| ^
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= help: if this is supposed to be its own paragraph, add a blank line
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#doc_lazy_continuation
help: indent this line
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24 | //! [blast](https://blast.ncbi.nlm.nih.gov/Blast.cgi).
| ++
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doc list item without indentation:
src/lib.rs#L23
warning: doc list item without indentation
--> src/lib.rs:23:5
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23 | //! reference. Find is useful for problems that can be solved with
| ^
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= help: if this is supposed to be its own paragraph, add a blank line
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#doc_lazy_continuation
help: indent this line
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23 | //! reference. Find is useful for problems that can be solved with
| ++
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doc list item without indentation:
src/lib.rs#L22
warning: doc list item without indentation
--> src/lib.rs:22:5
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22 | //! reference and reports the local alignment segments found within the
| ^
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= help: if this is supposed to be its own paragraph, add a blank line
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#doc_lazy_continuation
= note: `#[warn(clippy::doc_lazy_continuation)]` on by default
help: indent this line
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22 | //! reference and reports the local alignment segments found within the
| ++
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