warning: writing `&Vec` instead of `&[_]` involves a new object where a slice will do --> src/map.rs:175:10 | 175 | aln: &Vec<char>, | ^^^^^^^^^^ help: change this to: `&[char]` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#ptr_arg

warning: unneeded `return` statement --> src/map.rs:197:5 | 197 | return encodings; | ^^^^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_return help: remove `return` | 197 - return encodings; 197 + encodings |

warning: this expression creates a reference which is immediately dereferenced by the compiler --> src/map.rs:168:13 | 168 | run_to_aln(&runs, ms[i], params.threshold, params.k, &mut aln, &mut i); | ^^^^^ help: change this to: `runs` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow = note: `#[warn(clippy::needless_borrow)]` on by default

warning: the loop variable `i` is used to index `ms` --> src/map.rs:167:18 | 167 | for mut i in 3..(len - 1) { | ^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_range_loop = note: `#[warn(clippy::needless_range_loop)]` on by default help: consider using an iterator and enumerate() | 167 | for (i, <item>) in ms.iter().enumerate().take((len - 1)).skip(3) { | ~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

warning: writing `&Vec` instead of `&[_]` involves a new object where a slice will do --> src/map.rs:158:9 | 158 | ms: &Vec<usize>, | ^^^^^^^^^^^ help: change this to: `&[usize]` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#ptr_arg

warning: unneeded `return` statement --> src/map.rs:171:5 | 171 | return aln; | ^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_return help: remove `return` | 171 - return aln; 171 + aln |

warning: writing `&Vec` instead of `&[_]` involves a new object where a slice will do --> src/map.rs:139:9 | 139 | ms: &Vec<usize>, | ^^^^^^^^^^^ help: change this to: `&[usize]` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#ptr_arg

warning: unneeded `return` statement --> src/map.rs:153:5 | 153 | return runs; | ^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_return help: remove `return` | 153 - return runs; 153 + runs |

warning: using `clone` on type `usize` which implements the `Copy` trait --> src/map.rs:122:28 | 122 | let mut next_gap: usize = pos.clone(); | ^^^^^^^^^^^ help: try dereferencing it: `*pos` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#clone_on_copy = note: `#[warn(clippy::clone_on_copy)]` on by default

warning: this `if` has identical blocks --> src/map.rs:112:51 | 112 | } else if next == 1 && curr == curr_ms as i64 { | ___________________________________________________^ 113 | | res[*pos] = 'M'; 114 | | } else if curr > threshold as i64 { | |_____^ | note: same as this --> src/map.rs:114:39 | 114 | } else if curr > threshold as i64 { | _______________________________________^ 115 | | res[*pos] = 'M'; 116 | | } else if curr == next - 1 && curr > 0 { | |_____^ = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#if_same_then_else

warning: writing `&mut Vec` instead of `&mut [_]` involves a new object where a slice will do --> src/map.rs:100:10 | 100 | res: &mut Vec<char>, | ^^^^^^^^^^^^^^ help: change this to: `&mut [char]` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#ptr_arg

warning: writing `&Vec` instead of `&[_]` involves a new object where a slice will do --> src/map.rs:96:11 | 96 | runs: &Vec<i64>, | ^^^^^^^^^ help: change this to: `&[i64]` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#ptr_arg = note: `#[warn(clippy::ptr_arg)]` on by default

warning: this `if` has identical blocks --> src/map.rs:84:49 | 84 | } else if curr > threshold && next_run == 1 { | _________________________________________________^ 85 | | curr as i64 86 | | } else if curr > threshold && next_run < curr as i64 { | |_____^ | note: same as this --> src/map.rs:86:58 | 86 | } else if curr > threshold && next_run < curr as i64 { | __________________________________________________________^ 87 | | curr as i64 88 | | } else { | |_____^ = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#if_same_then_else

warning: this `if` has identical blocks --> src/map.rs:82:49 | 82 | } else if curr > threshold && next_run <= 0 { | _________________________________________________^ 83 | | curr as i64 84 | | } else if curr > threshold && next_run == 1 { | |_____^ | note: same as this --> src/map.rs:84:49 | 84 | } else if curr > threshold && next_run == 1 { | _________________________________________________^ 85 | | curr as i64 86 | | } else if curr > threshold && next_run < curr as i64 { | |_____^ = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#if_same_then_else

warning: this `if` has identical blocks --> src/map.rs:76:42 | 76 | } else if curr == k && next_run == 1 { | __________________________________________^ 77 | | k as i64 78 | | } else if curr == k && next_run < 0 { | |_____^ | note: same as this --> src/map.rs:78:41 | 78 | } else if curr == k && next_run < 0 { | _________________________________________^ 79 | | k as i64 80 | | } else if curr < threshold { | |_____^ = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#if_same_then_else

warning: this `if` has identical blocks --> src/map.rs:74:46 | 74 | let run: i64 = if curr == k && next == k { | ______________________________________________^ 75 | | k as i64 76 | | } else if curr == k && next_run == 1 { | |_____^ | note: same as this --> src/map.rs:76:42 | 76 | } else if curr == k && next_run == 1 { | __________________________________________^ 77 | | k as i64 78 | | } else if curr == k && next_run < 0 { | |_____^ = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#if_same_then_else = note: `#[warn(clippy::if_same_then_else)]` on by default

warning: unneeded `return` statement --> src/map.rs:92:5 | 92 | return run; | ^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_return help: remove `return` | 92 - return run; 92 + run |

warning: unneeded `return` statement --> src/map.rs:62:6 | 62 | return ms; | ^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_return help: remove `return` | 62 ~ ms 63 | }, 64 ~ } |

warning: unneeded `return` statement --> src/map.rs:45:5 | 45 | return (sbwt, lcs); | ^^^^^^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_return help: remove `return` | 45 - return (sbwt, lcs); 45 + (sbwt, lcs) |

warning: use of `unwrap_or` to construct default value --> src/build.rs:85:36 | 85 | let params = params_in.clone().unwrap_or(SBWTParams::default()); | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: try: `unwrap_or_default()` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#unwrap_or_default

warning: use of `unwrap_or` to construct default value --> src/build.rs:58:36 | 58 | let params = params_in.clone().unwrap_or(SBWTParams::default()); | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: try: `unwrap_or_default()` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#unwrap_or_default = note: `#[warn(clippy::unwrap_or_default)]` on by default

warning: unneeded `return` statement --> src/build.rs:77:5 | 77 | return (sbwt, lcs); | ^^^^^^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_return = note: `#[warn(clippy::needless_return)]` on by default help: remove `return` | 77 - return (sbwt, lcs); 77 + (sbwt, lcs) |

warning: struct `Logger` is never constructed --> src/main.rs:28:8 | 28 | struct Logger; | ^^^^^^ | = note: `#[warn(dead_code)]` on by default

warning: unused variable: `input_list` --> src/main.rs:89:6 | 89 | input_list, | ^^^^^^^^^^ help: try ignoring the field: `input_list: _`