Release Candidate 1.0.9 (#1275)

* temp remove parsnip dev dependency * polish news * update snapshot * tmp remove remotes * tmp change warn_new_levels() * do revdepcheck * Increment version number to 1.0.9
tidymodels · Dec 14, 2023 · cc984ff · cc984ff
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: recipes
 Title: Preprocessing and Feature Engineering Steps for Modeling
-Version: 1.0.8.9000
+Version: 1.0.9
 Authors@R: c(
     person("Max", "Kuhn", , "[email protected]", role = c("aut", "cre")),
     person("Hadley", "Wickham", , "[email protected]", role = "aut"),
@@ -52,7 +52,7 @@ Suggests:
     kernlab,
     knitr,
     modeldata (>= 0.1.1),
-    parsnip (>= 1.1.1.9001),
+    parsnip (>= 0.1.7),
     RANN,
     RcppRoll,
     rmarkdown,
@@ -72,5 +72,3 @@ Config/testthat/edition: 3
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.2.3
-Remotes:
-    tidymodels/parsnip
diff --git a/NEWS.md b/NEWS.md
@@ -1,26 +1,30 @@
-# recipes (development version)
+# recipes 1.0.9
 
-* Minor speed-up and reduced memory consumption for `step_pca()` in the `bake()` stage by reducing unused multiplications (@jkennel, #1265)
+## Improvements
 
-* Fixed bug where `step_factor2string()` if `strings_as_factors = TRUE` is set in `prep()`. (#317)
+* Minor speed-up and reduced memory consumption for `step_pca()` in the `bake()` stage by reducing unused multiplications (@jkennel, #1265)
 
 * Document that `update_role()`, `add_role()` and `remove_role()` are applied before steps and checks. (#778)
 
 * Documentation for tidy methods for all steps has been added when missing and improved to describe the return value more accurately. (#936)
 
 * `step_dummy()` will now error if passed character instead of loudly ignoring them. Only applicable when setting `strings_as_factors = FALSE`. (#1233)
 
-* Fixed bug where `tidy.step_cut()` always returned zero row tibbles for trained recipes. (#1229)
-
 * It is now documented that `step_spline_b()` can be made periodic. (#1223)
 
 * `prep()` now correctly throws a warning when `training` argument is set when prepping a prepped recipe, telling the user that it will be ignored. (#1244)
 
 * When errors are thrown about wrongly typed input to steps, the offending variables and their types are now listed. (#1217)
 
+* All warnings and errors have been updated to use the cli package for increased clarity and consistency. (#1237)
+
 * Added warnings when `step_scale()`, `step_normalise()`, `step_center()` or `step_range()` result in `NaN` columns. (@mastoffel, #1221)
 
-* All warnings and errors have been updated to use the cli package for increased clarity and consistency. (#1237)
+## Bug Fixes
+
+* Fixed bug where `step_factor2string()` if `strings_as_factors = TRUE` is set in `prep()`. (#317)
+
+* Fixed bug where `tidy.step_cut()` always returned zero row tibbles for trained recipes. (#1229)
 
 # recipes 1.0.8
 

diff --git a/R/dummy.R b/R/dummy.R
@@ -224,7 +224,7 @@ warn_new_levels <- function(dat, lvl, details = NULL) {
   if (length(ind) > 0) {
     lvl2 <- unique(dat[ind])
     cli::cli_warn(c(
-      "!" = "There are new levels in a factor: {.var {lvl2}}.",
+      "!" = "There are new levels in a factor: {lvl2}",
       details
     ))
   }

diff --git a/R/recipe.R b/R/recipe.R
@@ -282,8 +282,7 @@ inline_check <- function(x) {
           found: {.and {.code {funs}}}.",
       i = "Use steps to do transformations instead.",
       i = "If your modeling engine uses special terms in formulas, pass \\
-          that formula to workflows as a \\
-          {.help [model formula](parsnip::model_formula)}."
+          that formula to workflows as a model formula."
     ))
   }
 

diff --git a/revdep/README.md b/revdep/README.md
@@ -1,33 +1,33 @@
 # Platform
 
-|field    |value                                                                                      |
-|:--------|:------------------------------------------------------------------------------------------|
-|version  |R version 4.3.0 (2023-04-21)                                                               |
-|os       |macOS Ventura 13.5                                                                         |
-|system   |aarch64, darwin20                                                                          |
-|ui       |RStudio                                                                                    |
-|language |(EN)                                                                                       |
-|collate  |en_US.UTF-8                                                                                |
-|ctype    |en_US.UTF-8                                                                                |
-|tz       |America/Los_Angeles                                                                        |
-|date     |2023-08-25                                                                                 |
-|rstudio  |2023.09.0-daily+343 Desert Sunflower (desktop)                                             |
-|pandoc   |3.1.1 @ /Applications/RStudio.app/Contents/Resources/app/quarto/bin/tools/ (via rmarkdown) |
+|field    |value                               |
+|:--------|:-----------------------------------|
+|version  |R version 4.3.1 (2023-06-16)        |
+|os       |macOS Sonoma 14.1.2                 |
+|system   |aarch64, darwin20                   |
+|ui       |RStudio                             |
+|language |(EN)                                |
+|collate  |en_US.UTF-8                         |
+|ctype    |en_US.UTF-8                         |
+|tz       |America/Los_Angeles                 |
+|date     |2023-12-12                          |
+|rstudio  |2023.12.0+359 Ocean Storm (desktop) |
+|pandoc   |2.17.1.1 @ /opt/homebrew/bin/pandoc |
 
 # Dependencies
 
 |package      |old        |new        |Δ  |
 |:------------|:----------|:----------|:--|
-|recipes      |1.0.7      |1.0.7.9000 |*  |
-|cli          |3.6.1      |3.6.1      |   |
+|recipes      |1.0.8      |1.0.8.9000 |*  |
+|cli          |3.6.2      |3.6.2      |   |
 |clock        |0.7.0      |0.7.0      |   |
-|cpp11        |0.4.6      |0.4.6      |   |
-|data.table   |1.14.8     |1.14.8     |   |
+|cpp11        |0.4.7      |0.4.7      |   |
+|data.table   |1.14.10    |1.14.10    |   |
 |diagram      |1.6.5      |1.6.5      |   |
 |digest       |0.6.33     |0.6.33     |   |
-|dplyr        |1.1.2      |1.1.2      |   |
+|dplyr        |1.1.4      |1.1.4      |   |
 |ellipsis     |0.3.2      |0.3.2      |   |
-|fansi        |1.0.4      |1.0.4      |   |
+|fansi        |1.0.6      |1.0.6      |   |
 |future       |1.33.0     |1.33.0     |   |
 |future.apply |1.11.0     |1.11.0     |   |
 |generics     |0.1.3      |0.1.3      |   |
@@ -36,34 +36,34 @@
 |gower        |1.0.1      |1.0.1      |   |
 |hardhat      |1.3.0      |1.3.0      |   |
 |ipred        |0.9-14     |0.9-14     |   |
-|lava         |1.7.2.1    |1.7.2.1    |   |
-|lifecycle    |1.0.3      |1.0.3      |   |
+|lava         |1.7.3      |1.7.3      |   |
+|lifecycle    |1.0.4      |1.0.4      |   |
 |listenv      |0.9.0      |0.9.0      |   |
-|lubridate    |1.9.2      |1.9.2      |   |
+|lubridate    |1.9.3      |1.9.3      |   |
 |magrittr     |2.0.3      |2.0.3      |   |
 |numDeriv     |2016.8-1.1 |2016.8-1.1 |   |
 |parallelly   |1.36.0     |1.36.0     |   |
 |pillar       |1.9.0      |1.9.0      |   |
 |pkgconfig    |2.0.3      |2.0.3      |   |
-|prodlim      |2023.03.31 |2023.03.31 |   |
+|prodlim      |2023.08.28 |2023.08.28 |   |
 |progressr    |0.14.0     |0.14.0     |   |
 |purrr        |1.0.2      |1.0.2      |   |
 |R6           |2.5.1      |2.5.1      |   |
 |Rcpp         |1.0.11     |1.0.11     |   |
-|rlang        |1.1.1      |1.1.1      |   |
+|rlang        |1.1.2      |1.1.2      |   |
 |shape        |1.4.6      |1.4.6      |   |
 |SQUAREM      |2021.1     |2021.1     |   |
-|stringi      |1.7.12     |1.7.12     |   |
-|stringr      |1.5.0      |1.5.0      |   |
+|stringi      |1.8.3      |1.8.3      |   |
+|stringr      |1.5.1      |1.5.1      |   |
 |tibble       |3.2.1      |3.2.1      |   |
 |tidyr        |1.3.0      |1.3.0      |   |
 |tidyselect   |1.2.0      |1.2.0      |   |
 |timechange   |0.2.0      |0.2.0      |   |
 |timeDate     |4022.108   |4022.108   |   |
 |tzdb         |0.4.0      |0.4.0      |   |
-|utf8         |1.2.3      |1.2.3      |   |
-|vctrs        |0.6.3      |0.6.3      |   |
-|withr        |2.5.0      |2.5.0      |   |
+|utf8         |1.2.4      |1.2.4      |   |
+|vctrs        |0.6.5      |0.6.5      |   |
+|withr        |2.5.2      |2.5.2      |   |
 
 # Revdeps
 
@@ -72,6 +72,12 @@
 |package      |version |error |warning |note |
 |:------------|:-------|:-----|:-------|:----|
 |D2MCS        |1.0.1   |1     |        |     |
+|dann         |1.0.0   |1     |        |     |
 |hydrorecipes |0.0.3   |1     |        |     |
-|workboots    |0.2.0   |1     |        |     |
+
+## New problems (1)
+
+|package      |version |error |warning  |note |
+|:------------|:-------|:-----|:--------|:----|
+|[healthcareai](problems.md#healthcareai)|2.5.1   |2     |1 __+1__ |1    |
 
diff --git a/revdep/cran.md b/revdep/cran.md
@@ -1,14 +1,20 @@
 ## revdepcheck results
 
-We checked 63 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
+We checked 69 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
 
- * We saw 0 new problems
+ * We saw 1 new problems
  * We failed to check 3 packages
 
 Issues with CRAN packages are summarised below.
 
+### New problems
+(This reports the first line of each new failure)
+
+* healthcareai
+  checking dependencies in R code ... WARNING
+
 ### Failed to check
 
 * D2MCS        (NA)
+* dann         (NA)
 * hydrorecipes (NA)
-* workboots    (NA)
diff --git a/revdep/failures.md b/revdep/failures.md
@@ -59,6 +59,80 @@ ERROR: lazy loading failed for package ‘D2MCS’
 * removing ‘/Users/emilhvitfeldt/Github/recipes/revdep/checks.noindex/D2MCS/old/D2MCS.Rcheck/D2MCS’
 
 
+```
+# dann
+
+<details>
+
+* Version: 1.0.0
+* GitHub: NA
+* Source code: https://github.com/cran/dann
+* Date/Publication: 2023-09-23 15:50:03 UTC
+* Number of recursive dependencies: 121
+
+Run `revdepcheck::revdep_details(, "dann")` for more info
+
+</details>
+
+## In both
+
+*   checking whether package ‘dann’ can be installed ... ERROR
+    ```
+    Installation failed.
+    See ‘/Users/emilhvitfeldt/Github/recipes/revdep/checks.noindex/dann/new/dann.Rcheck/00install.out’ for details.
+    ```
+
+## Installation
+
+### Devel
+
+```
+* installing *source* package ‘dann’ ...
+** package ‘dann’ successfully unpacked and MD5 sums checked
+** using staged installation
+** libs
+using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
+using SDK: ‘MacOSX14.0.sdk’
+clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/include" -DNDEBUG  -I'/Users/emilhvitfeldt/Github/recipes/revdep/library.noindex/recipes/new/Rcpp/include' -I'/Users/emilhvitfeldt/Github/recipes/revdep/library.noindex/dann/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
+clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/include" -DNDEBUG  -I'/Users/emilhvitfeldt/Github/recipes/revdep/library.noindex/recipes/new/Rcpp/include' -I'/Users/emilhvitfeldt/Github/recipes/revdep/library.noindex/dann/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c internal_armadillo_helpers.cpp -o internal_armadillo_helpers.o
+clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/include" -DNDEBUG  -I'/Users/emilhvitfeldt/Github/recipes/revdep/library.noindex/recipes/new/Rcpp/include' -I'/Users/emilhvitfeldt/Github/recipes/revdep/library.noindex/dann/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c internal_helpers_C.cpp -o internal_helpers_C.o
+clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib -L/opt/R/arm64/lib -o dann.so RcppExports.o internal_armadillo_helpers.o internal_helpers_C.o -L/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/Versions/4.3-arm64 -framework R -Wl,-framework -Wl,CoreFoundation
+ld: warning: -single_module is obsolete
+ld: warning: -multiply_defined is obsolete
+ld: warning: search path '/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0' not found
+ld: warning: search path '/opt/gfortran/lib' not found
+ld: library 'gfortran' not found
+clang: error: linker command failed with exit code 1 (use -v to see invocation)
+make: *** [dann.so] Error 1
+ERROR: compilation failed for package ‘dann’
+* removing ‘/Users/emilhvitfeldt/Github/recipes/revdep/checks.noindex/dann/new/dann.Rcheck/dann’
+
+
+```
+### CRAN
+
+```
+* installing *source* package ‘dann’ ...
+** package ‘dann’ successfully unpacked and MD5 sums checked
+** using staged installation
+** libs
+using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
+using SDK: ‘MacOSX14.0.sdk’
+clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/include" -DNDEBUG  -I'/Users/emilhvitfeldt/Github/recipes/revdep/library.noindex/recipes/old/Rcpp/include' -I'/Users/emilhvitfeldt/Github/recipes/revdep/library.noindex/dann/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
+clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/include" -DNDEBUG  -I'/Users/emilhvitfeldt/Github/recipes/revdep/library.noindex/recipes/old/Rcpp/include' -I'/Users/emilhvitfeldt/Github/recipes/revdep/library.noindex/dann/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c internal_armadillo_helpers.cpp -o internal_armadillo_helpers.o
+clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/include" -DNDEBUG  -I'/Users/emilhvitfeldt/Github/recipes/revdep/library.noindex/recipes/old/Rcpp/include' -I'/Users/emilhvitfeldt/Github/recipes/revdep/library.noindex/dann/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c internal_helpers_C.cpp -o internal_helpers_C.o
+clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib -L/opt/R/arm64/lib -o dann.so RcppExports.o internal_armadillo_helpers.o internal_helpers_C.o -L/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/Versions/4.3-arm64 -framework R -Wl,-framework -Wl,CoreFoundation
+ld: warning: -single_module is obsolete
+ld: warning: -multiply_defined is obsolete
+ld: warning: search path '/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0' not found
+ld: warning: search path '/opt/gfortran/lib' not found
+ld: library 'gfortran' not found
+clang: error: linker command failed with exit code 1 (use -v to see invocation)
+make: *** [dann.so] Error 1
+ERROR: compilation failed for package ‘dann’
+* removing ‘/Users/emilhvitfeldt/Github/recipes/revdep/checks.noindex/dann/old/dann.Rcheck/dann’
+
+
 ```
 # hydrorecipes
 
@@ -137,64 +211,4 @@ ERROR: compilation failed for package ‘hydrorecipes’
 * removing ‘/Users/emilhvitfeldt/Github/recipes/revdep/checks.noindex/hydrorecipes/old/hydrorecipes.Rcheck/hydrorecipes’
 
 
-```
-# workboots
-
-<details>
-
-* Version: 0.2.0
-* GitHub: https://github.com/markjrieke/workboots
-* Source code: https://github.com/cran/workboots
-* Date/Publication: 2022-05-16 06:40:02 UTC
-* Number of recursive dependencies: 137
-
-Run `revdepcheck::revdep_details(, "workboots")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘workboots’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/Users/emilhvitfeldt/Github/recipes/revdep/checks.noindex/workboots/new/workboots.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘workboots’ ...
-** package ‘workboots’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  there is no package called ‘gridExtra’
-Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘workboots’
-* removing ‘/Users/emilhvitfeldt/Github/recipes/revdep/checks.noindex/workboots/new/workboots.Rcheck/workboots’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘workboots’ ...
-** package ‘workboots’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  there is no package called ‘gridExtra’
-Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘workboots’
-* removing ‘/Users/emilhvitfeldt/Github/recipes/revdep/checks.noindex/workboots/old/workboots.Rcheck/workboots’
-
-
 ```