Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add R CMD check without Suggests #361

Merged
merged 3 commits into from
Oct 22, 2024
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
60 changes: 60 additions & 0 deletions .github/workflows/R-CMD-check-hard.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,60 @@
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
#
# NOTE: This workflow only directly installs "hard" dependencies, i.e. Depends,
# Imports, and LinkingTo dependencies. Notably, Suggests dependencies are never
# installed, with the exception of testthat, knitr, and rmarkdown. The cache is
# never used to avoid accidentally restoring a cache containing a suggested
# dependency.
on:
push:
branches: [main, master]
pull_request:
branches: [main, master]

name: R-CMD-check-no-suggests.yaml

permissions: read-all

jobs:
check-no-suggests:
runs-on: ${{ matrix.config.os }}

name: ${{ matrix.config.os }} (${{ matrix.config.r }})

strategy:
fail-fast: false
matrix:
config:
- {os: ubuntu-latest, r: 'release'}

env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes

steps:
- uses: actions/checkout@v4

- uses: r-lib/actions/setup-pandoc@v2

- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
dependencies: '"hard"'
cache: false
extra-packages: |
any::rcmdcheck
any::testthat
any::knitr
any::rmarkdown
needs: check

- uses: r-lib/actions/check-r-package@v2
with:
upload-snapshots: true
build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
1 change: 1 addition & 0 deletions README.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -23,6 +23,7 @@ knitr::opts_chunk$set(
[![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/dials)](https://CRAN.R-project.org/package=dials)
[![Downloads](http://cranlogs.r-pkg.org/badges/dials)](https://CRAN.R-project.org/package=dials)
[![lifecycle](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html)
[![R-CMD-check-hard](https://github.com/tidymodels/dials/actions/workflows/R-CMD-check-hard.yaml/badge.svg)](https://github.com/tidymodels/dials/actions/workflows/R-CMD-check-hard.yaml)
<!-- badges: end -->

## Overview
Expand Down
1 change: 1 addition & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -11,6 +11,7 @@ coverage](https://codecov.io/gh/tidymodels/dials/branch/main/graph/badge.svg)](h
[![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/dials)](https://CRAN.R-project.org/package=dials)
[![Downloads](http://cranlogs.r-pkg.org/badges/dials)](https://CRAN.R-project.org/package=dials)
[![lifecycle](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html)
[![R-CMD-check-hard](https://github.com/tidymodels/dials/actions/workflows/R-CMD-check-hard.yaml/badge.svg)](https://github.com/tidymodels/dials/actions/workflows/R-CMD-check-hard.yaml)
<!-- badges: end -->

## Overview
Expand Down
8 changes: 6 additions & 2 deletions tests/testthat/test-finalize.R
Original file line number Diff line number Diff line change
@@ -1,6 +1,4 @@

suppressMessages(library(kernlab))

test_that("estimate columns", {
expect_snapshot(error = TRUE, get_p(1:10))
expect_snapshot(error = TRUE, get_p(1:10, 1:10))
Expand Down Expand Up @@ -48,6 +46,9 @@ test_that("estimate rows", {


test_that("estimate sigma", {
skip_if_not_installed("kernlab")
suppressMessages(library(kernlab))

expect_snapshot(error = TRUE, get_rbf_range(rbf_sigma(), iris))

run_1 <- range_get(get_rbf_range(rbf_sigma(), mtcars, seed = 5624))
Expand All @@ -58,6 +59,9 @@ test_that("estimate sigma", {


test_that("force", {
skip_if_not_installed("kernlab")
suppressMessages(library(kernlab))

rbf_sigma_final <- finalize(rbf_sigma(), mtcars)
rbf_sigma_same <- finalize(rbf_sigma(), mtcars, force = FALSE)

Expand Down
Loading