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| FROM rocker/verse | ||
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| MAINTAINER Thibaut Jombart <[email protected]> | ||
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| RUN apt-get update && apt-get upgrade -y | ||
| RUN apt-get install libssl-dev libxml2-dev pandoc pandoc-citeproc libblas-dev liblapack-dev git qpdf -y | ||
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| ## add guest user | ||
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| RUN adduser --disabled-password --gecos "" guest | ||
| RUN usermod -a -G users guest && usermod -a -G staff guest | ||
| RUN chmod a+rw /usr/local/lib/R/site-library -R | ||
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| ## install CRAN packages | ||
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| RUN echo 'options(download.file.method = "libcurl", repos = c(CRAN = "https://cran.ma.imperial.ac.uk"))' > ~/.Rprofile | ||
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| RUN r -e "install.packages('devtools')" \ | ||
| && r -e "install.packages('roxygen2')" \ | ||
| && r -e "install.packages('testthat')" \ | ||
| && r -e "install.packages('rmarkdown')" \ | ||
| && r -e "install.packages('adegenet', dependencies = c('Depends', 'Imports'))" \ | ||
| && r -e "install.packages('pegas')" \ | ||
| && r -e "install.packages('hierfstat')" \ | ||
| && r -e "install.packages('poppr')" \ | ||
| && r -e "install.packages('akima')" \ | ||
| && r -e "install.packages('maps')" \ | ||
| && r -e "install.packages('splancs')" \ | ||
| && r -e "install.packages('tripack')" | ||
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| ## install devel packages (github) | ||
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| RUN r -e "devtools::install_github('thibautjombart/adegenet')" | ||
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| ## clone repos to get sources | ||
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| RUN su guest | ||
| RUN mkdir ~/dev | ||
| WORKDIR /home/guest/dev | ||
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| RUN git clone https://github.com/thibautjombart/adegenet | ||
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| WORKDIR /home/guest/ | ||
| RUN ls='ls --color=auto' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,49 @@ | ||
| FROM rocker/drd | ||
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| MAINTAINER Thibaut Jombart <[email protected]> | ||
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| RUN apt-get update && apt-get upgrade -y | ||
| RUN apt-get install libssl-dev libxml2-dev pandoc pandoc-citeproc libblas-dev liblapack-dev git qpdf -y | ||
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| ## add guest user | ||
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| RUN adduser --disabled-password --gecos "" guest | ||
| RUN usermod -a -G users guest && usermod -a -G staff guest | ||
| RUN chmod a+rw /usr/local/lib/R/site-library -R | ||
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| ## install CRAN packages | ||
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| RUN echo 'options(download.file.method = "libcurl", repos = c(CRAN = "https://cran.ma.imperial.ac.uk"))' > ~/.Rprofile | ||
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| RUN r -e "install.packages('devtools')" \ | ||
| && r -e "install.packages('roxygen2')" \ | ||
| && r -e "install.packages('testthat')" \ | ||
| && r -e "install.packages('rmarkdown')" \ | ||
| && r -e "install.packages('adegenet', dependencies = c('Depends', 'Imports'))" \ | ||
| && r -e "install.packages('pegas')" \ | ||
| && r -e "install.packages('hierfstat')" \ | ||
| && r -e "install.packages('poppr')" \ | ||
| && r -e "install.packages('akima')" \ | ||
| && r -e "install.packages('maps')" \ | ||
| && r -e "install.packages('splancs')" \ | ||
| && r -e "install.packages('tripack')" | ||
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| ## install devel packages (github) | ||
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| RUN r -e "devtools::install_github('thibautjombart/adegenet')" | ||
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| ## clone repos to get sources | ||
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| RUN su guest | ||
| RUN mkdir ~/dev | ||
| WORKDIR /home/guest/dev | ||
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| RUN git clone https://github.com/thibautjombart/adegenet | ||
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| WORKDIR /home/guest/ | ||
| RUN ls='ls --color=auto' |