This project contains a set of functions to automate the counting and categorization of molecules, and is specifically tailored for data generated from low temperature scanning probe microscopes.
We described our approach in Software Impacts, and the code was also used to generate Fig. 3 of this publication.
This is a glorified script that makes use of existing python libraries. Written in python 3+, if unsure, start by installing Anaconda.
This package is not yet registered. To install, clone this repository, navigate to its directory, and run:
pip install .
Helicene_example, APT_example and APT_2_example are three example scripts that generate the figures in our article.
Steps to reproduce:
- Download the data files from this figshare repo into the examples folder.
- Run the individual script files in the examples folder to generate each figure.
We use github, see the tags on this repository
- Jack Hellerstedt jhellerstedt
- Tyler Hennen THennen
This project is licensed under the MIT License.
This project was inspired by the need to analyze the data that eventually resulted in this publication. We also made use of the data available from this work. This happened at the Nanosurf lab.