Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Normalized Count Scaling Before PCA? #257

Open
AlinaKurjan opened this issue Jan 10, 2024 · 0 comments
Open

Normalized Count Scaling Before PCA? #257

AlinaKurjan opened this issue Jan 10, 2024 · 0 comments
Labels
question Further information is requested

Comments

@AlinaKurjan
Copy link

AlinaKurjan commented Jan 10, 2024

Should normalized counts be scaled before running PCA?

I was just looking through the dimensionality reduction section and noticed that you use the log1p_norm counts for the PCA. Is there a particular reason for not applying scaling before PCA as a best practice approach?

Thank you for your time and resources!

@AlinaKurjan AlinaKurjan added the question Further information is requested label Jan 10, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
question Further information is requested
Projects
None yet
Development

No branches or pull requests

1 participant