-
Notifications
You must be signed in to change notification settings - Fork 17
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
[SRA-Fetch] Reimplement using fasterq-dump directly to avoid SRA-Lite file download #479
Comments
FYI it's not always It tries to download SRA Normalized format when possible but even with that configuration it is still possible to download SRA Lite formatted files. This happens when SRA only serves up the SRA lite formatted files and doesn't serve up the original/SRA Normalized formatted files Just warning that even if we switch to |
The current implementation of fastq-dl doesn't seem very robust to avoid downloading SRA-Lite files. One alternative is to reimplement the workflow by leveraging NCBI's Fasterq-dump directly
The text was updated successfully, but these errors were encountered: