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@szhan
szhan committed Jun 18, 2024
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Expand Up @@ -7,6 +7,13 @@ This is a Python library for prototyping and testing implementations of algorith
Reference panel contains sample and/or (partial) ancestral haplotypes.

### Demo

Forwards algorithm
Backwards algorithm
Viterbi algorithm
Log-likelihood evaluation of a copying path

### Features
* Scaling of mutation rate by the number of distinct alleles per site.
* Non-copiable allelic state in the reference panel (`NONCOPY`).
* Missing allelic state in the query (`MISSING`).
* Multiallelic sites.

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