Deployed eec07da with MkDocs version: 1.1.2

Using.html

@@ -211,7 +211,7 @@ <h2>Default parameters setup<a class="headerlink" href="#default-parameters-setu
 is a concrete example with specific parameter values shown below. Users can refer to it by assigning
 their values to their certain demands or based on future biological data in hand.</p>
 <ul class="simple">
-<li><p>“nSpeces” = 15, assigning the number of species as 15;</p></li>
+<li><p>“nSpeces” = 15, assigning nSpecies as 15, which excludes the input and output species but includes gene species. Therefore, the total number of species should be 17.</p></li>
 <li><p>“nRxns” = 22, assigning the number of reactions as 22;</p></li>
 <li><p>“nSpecies_gene” = 9, assigning the number of gene species as 9;</p></li>
 <li><p>“rxn_speices_initial” = 0, and “rnd_species_range” = 10, meaning random generation for species concentrations in the range of [0, 10);</p></li>

_sources/Using.rst.txt

@@ -74,7 +74,7 @@ The Julia script on `GitHub <https://github.com/sys-bio/artificial_random_signal
 is a concrete example with specific parameter values shown below. Users can refer to it by assigning
 their values to their certain demands or based on future biological data in hand.
 
-* "nSpeces" = 15, assigning the number of species as 15;
+* "nSpeces" = 15, assigning nSpecies as 15, which excludes the input and output species but includes gene species. Therefore, the total number of species should be 17.
 
 * "nRxns" = 22, assigning the number of reactions as 22;
 

sitemap.xml

@@ -1,7 +1,7 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9"><url>
      <loc>https://github.com/SunnyXu/artificial_random_signaling_network/</loc>
-     <lastmod>2024-05-29</lastmod>
+     <lastmod>2024-06-07</lastmod>
      <changefreq>daily</changefreq>
     </url>
 </urlset>