Building libsbmlnetworkjs #13
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| name: build-libsbmlnetworkjs-github-actions | |
| run-name: Building libsbmlnetworkjs | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| sbmlnetwork_version: | |
| description: 'SBMLNetwork version number' | |
| required: true | |
| default: '0.4.5' | |
| libsbml_version: | |
| description: 'LibSBML version number' | |
| required: true | |
| default: '5.20.0' | |
| jobs: | |
| build-new-version-libsbmlnetworkjs: | |
| runs-on: ubuntu-latest | |
| env: | |
| EMSDK: emsdk | |
| EMSCRIPTEN_VERS: '3.1.20' | |
| EMSDK_NODE: emsdk/node/16.20.0_64bit/bin/node | |
| SBML_VERS: ${{ inputs.libsbml_version }} | |
| SBMLNETWORK_VERS: ${{ inputs.SBMLNETWORK_VERSion }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: get emscripten | |
| run: git clone https://github.com/emscripten-core/emsdk.git | |
| - name: change emsdk script permissions | |
| run: chmod +x emsdk | |
| working-directory: emsdk | |
| - name: install emscripten sdk | |
| run: ./emsdk install $EMSCRIPTEN_VERS | |
| working-directory: emsdk | |
| - name: activate emscripten | |
| run: ./emsdk activate $EMSCRIPTEN_VERS | |
| working-directory: emsdk | |
| - run: echo "$GITHUB_WORKSPACE/emsdk/upstream/emscripten" >> $GITHUB_PATH | |
| - run: echo "$GITHUB_WORKSPACE/emsdk" >> $GITHUB_PATH | |
| - name: confirm emscripten works | |
| run: emcc -v | |
| - run: echo $PATH | |
| - run: echo $EMSDK_NODE | |
| - run: mkdir install | |
| - run: wget https://github.com/libexpat/libexpat/releases/download/R_2_2_10/expat-2.2.10.tar.bz2 | |
| - run: tar -xf expat-2.2.10.tar.bz2 | |
| - run: mv expat-2.2.10 expat | |
| - name: make expat build dir | |
| run: mkdir build | |
| working-directory: expat | |
| - name: build expat lib | |
| run: emcmake cmake .. -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/install/expat | |
| working-directory: expat/build | |
| - name: Compile expat lib | |
| run: emmake make | |
| working-directory: expat/build | |
| - name: install expat lib | |
| run: emmake make install | |
| working-directory: expat/build | |
| - name: Get libSBML | |
| run: wget https://github.com/sbmlteam/libsbml/archive/refs/tags/v$SBML_VERS.zip | |
| - run: unzip v$SBML_VERS.zip | |
| - run: mv libsbml-$SBML_VERS libsbml | |
| - name: make libsbml build dir | |
| run: mkdir build | |
| working-directory: libsbml | |
| - name: build libsbml library | |
| run: emcmake cmake .. -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/install/sbml -DCMAKE_BUILD_TYPE=Release -DWITH_CPP_NAMESPACE=ON -DWITH_EXPAT=ON -DWITH_LIBXML=OFF -DLIBSBML_SKIP_SHARED_LIBRARY=ON -DENABLE_LAYOUT=ON -DENABLE_RENDER=ON -DWITH_STABLE_PACKAGES=ON -DWITH_SWIG=OFF -DEXPAT_INCLUDE_DIR=$GITHUB_WORKSPACE/install/expat/include -DEXPAT_LIBRARY=$GITHUB_WORKSPACE/install/expat/lib/libexpat.a | |
| working-directory: libsbml/build | |
| - name: compile libsbml lib | |
| run: emmake make | |
| working-directory: libsbml/build | |
| - name: install libsbml | |
| run: emmake make install | |
| working-directory: libsbml/build | |
| - name: Get SBMLNetwork | |
| run: wget https://github.com/sys-bio/SBMLNetwork/archive/refs/tags/v$SBMLNETWORK_VERS.zip | |
| - run: unzip v$SBMLNETWORK_VERS.zip | |
| - run: mv SBMLNetwork-$SBMLNETWORK_VERS/ SBMLNetwork | |
| - name: make SBMLNetwork build dir | |
| run: mkdir build | |
| working-directory: SBMLNetwork | |
| - name: Build SBMLNetwork library | |
| run: emcmake cmake .. -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/install/SBMLNetwork -DCMAKE_BUILD_TYPE=Release -DEXPAT_INSTALL_PREFIX=$GITHUB_WORKSPACE/install/expat -DLIBEXPAT_LIBRARY=$GITHUB_WORKSPACE/install/expat/lib/libexpat.a -DLIBSBML_INSTALL_PREFIX=$GITHUB_WORKSPACE/install/sbml -DLIBSBML_LIBRARY=$GITHUB_WORKSPACE/install/sbml/lib/libsbml-static.a -DWITH_PYTHON=OFF | |
| working-directory: SBMLNetwork/build | |
| - name: Compile SBMLNetwork lib | |
| run: emmake make | |
| working-directory: SBMLNetwork/build | |
| - name: Install SBMLNetwork lib | |
| run: emmake make install | |
| working-directory: SBMLNetwork/build | |
| - name: Generate SBMLNetwork javascript and wasm files | |
| run: em++ -I$GITHUB_WORKSPACE/install/SBMLNetwork/include -I$GITHUB_WORKSPACE/install/sbml/include -I$GITHUB_WORKSPACE/install/expat/include $GITHUB_WORKSPACE/install/SBMLNetwork/lib/libsbmlnetwork.a $GITHUB_WORKSPACE/install/sbml/lib/libsbml-static.a $GITHUB_WORKSPACE/install/expat/lib/libexpat.a -o libsbmlnetwork.js -s WASM=1 -s LINKABLE=1 -s EXPORT_ALL=1 -s EXPORTED_RUNTIME_METHODS='["ccall", "cwrap", "allocateUTF8", "UTF8ToString"]' | |
| working-directory: install | |
| - name: List build libsbmlnetworkjs files | |
| run: ls -l | |
| working-directory: install | |
| - name: Build output directory | |
| run: | | |
| mkdir -p $GITHUB_WORKSPACE/libsbmlnetworkjs | |
| echo "artifacts_path=$GITHUB_WORKSPACE/libsbmlnetworkjs" >> "${GITHUB_ENV}" | |
| - name: Copy libsbmlnetworkjs files to the workspace | |
| run: | | |
| cp install/libsbmlnetwork.js $GITHUB_WORKSPACE/libsbmlnetworkjs/ | |
| cp install/libsbmlnetwork.wasm $GITHUB_WORKSPACE/libsbmlnetworkjs/ | |
| - name: Verify copied files | |
| run: ls -l $GITHUB_WORKSPACE/libsbmlnetworkjs | |
| - name: Upload libsbmlnetworkjs files | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: libsbmlnetworkjs | |
| path: ${{env.artifacts_path}} |