jax install #1721
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| # Run OpenMDAO Tests | |
| name: OpenMDAO Tests | |
| on: | |
| # Trigger on push or pull request events for the master branch | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| # Allow running the workflow manually from the Actions tab | |
| # All jobs are excluded by default, desired jobs must be selected | |
| workflow_dispatch: | |
| inputs: | |
| run_name: | |
| type: string | |
| description: 'Name of workflow run as it will appear under Actions tab:' | |
| required: false | |
| default: "" | |
| Ubuntu_Baseline: | |
| type: boolean | |
| description: 'Include Ubuntu Baseline in test matrix' | |
| required: false | |
| default: false | |
| MacOS_Baseline: | |
| type: boolean | |
| description: 'Include MacOS Baseline in test matrix' | |
| required: false | |
| default: false | |
| MacOS_ARM: | |
| type: boolean | |
| description: 'Include MacOS ARM in test matrix' | |
| required: false | |
| default: false | |
| Windows_Baseline: | |
| type: boolean | |
| description: 'Include Windows Baseline in test matrix' | |
| required: false | |
| default: false | |
| Ubuntu_Minimal: | |
| type: boolean | |
| description: 'Include Ubuntu Minimal in test matrix' | |
| required: false | |
| default: false | |
| Ubuntu_Oldest: | |
| type: boolean | |
| description: 'Include Ubuntu Oldest in test matrix' | |
| required: false | |
| default: false | |
| Build_Docs: | |
| type: boolean | |
| description: 'Build docs' | |
| required: false | |
| default: false | |
| debug_enabled: | |
| type: boolean | |
| description: 'Run the build with tmate debugging enabled (https://github.com/marketplace/actions/debugging-with-tmate)' | |
| required: false | |
| default: false | |
| run-name: ${{ inputs.run_name }} | |
| permissions: {} | |
| jobs: | |
| tests: | |
| timeout-minutes: 120 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| # test baseline versions on Ubuntu | |
| - NAME: Ubuntu Baseline | |
| OS: ubuntu-latest | |
| PY: '3.12' | |
| NUMPY: '1.26' | |
| SCIPY: '1.14' | |
| PETSc: '3.20' | |
| PYOPTSPARSE: 'v2.11.0' | |
| # PAROPT: true | |
| SNOPT: '7.7' | |
| OPTIONAL: '[all]' | |
| BANDIT: true | |
| PEP517: true | |
| TESTS: true | |
| EXCLUDE: ${{ github.event_name == 'workflow_dispatch' && ! inputs.Ubuntu_Baseline }} | |
| # test baseline versions on MacOS | |
| - NAME: MacOS Baseline | |
| OS: macos-13 | |
| PY: '3.12' | |
| NUMPY: '1.26' | |
| SCIPY: '1.13' | |
| PETSc: '3.20' | |
| PYOPTSPARSE: 'v2.11.0' | |
| # PAROPT: true | |
| SNOPT: '7.7' | |
| OPTIONAL: '[docs,doe,jax,notebooks,test]' | |
| TESTS: true | |
| EXCLUDE: ${{ github.event_name == 'workflow_dispatch' && ! inputs.MacOS_Baseline }} | |
| # test baseline versions on MacOS/ARM | |
| - NAME: MacOS ARM | |
| OS: macos-14 | |
| PY: '3.12' | |
| NUMPY: '1.26' | |
| SCIPY: '1.14' | |
| PETSc: '3.20' | |
| # PYOPTSPARSE: 'v2.11.0' | |
| # PAROPT: true | |
| # SNOPT: '7.7' | |
| OPTIONAL: '[all]' | |
| TESTS: true | |
| EXCLUDE: ${{ github.event_name == 'workflow_dispatch' && ! inputs.MacOS_ARM }} | |
| # test minimal install | |
| - NAME: Ubuntu Minimal | |
| OS: ubuntu-latest | |
| PY: '3.12' | |
| NUMPY: '1.26' | |
| SCIPY: '1.14' | |
| OPTIONAL: '[test]' | |
| TESTS: true | |
| EXCLUDE: ${{ github.event_name == 'workflow_dispatch' && ! inputs.Ubuntu_Minimal }} | |
| # test oldest supported versions | |
| - NAME: Ubuntu Oldest | |
| OS: ubuntu-latest | |
| PY: '3.9' | |
| NUMPY: '1.24' | |
| SCIPY: '1.9' | |
| OPENMPI: '4.0' | |
| MPI4PY: '3.0' | |
| PETSc: '3.13' | |
| PYOPTSPARSE: 'v2.10.2' | |
| SNOPT: '7.2' | |
| OPTIONAL: '[all]' | |
| TESTS: true | |
| EXCLUDE: ${{ github.event_name == 'workflow_dispatch' && ! inputs.Ubuntu_Oldest }} | |
| # build docs (baseline versions) | |
| - NAME: Build Docs | |
| OS: ubuntu-latest | |
| PY: '3.11' | |
| NUMPY: '1.26' | |
| SCIPY: '1.13' | |
| PETSc: '3.19' | |
| PYOPTSPARSE: 'v2.11.0' | |
| SNOPT: '7.7' | |
| OPTIONAL: '[all]' | |
| BUILD_DOCS: true | |
| EXCLUDE: ${{ github.event_name == 'workflow_dispatch' && ! inputs.Build_Docs }} | |
| runs-on: ${{ matrix.OS }} | |
| name: ${{ matrix.NAME }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Display run details | |
| run: | | |
| echo "=============================================================" | |
| echo "Run #${GITHUB_RUN_NUMBER}" | |
| echo "Run ID: ${GITHUB_RUN_ID}" | |
| echo "Testing: ${GITHUB_REPOSITORY}" | |
| echo "Triggered by: ${GITHUB_EVENT_NAME}" | |
| echo "Initiated by: ${GITHUB_ACTOR}" | |
| echo "=============================================================" | |
| - name: Exit if this job was excluded | |
| if: matrix.EXCLUDE | |
| uses: actions/github-script@v7 | |
| with: | |
| script: core.setFailed('The ${{ matrix.NAME }} job was excluded from the run, exiting...'); | |
| - name: Create SSH key | |
| if: (matrix.SNOPT || matrix.BUILD_DOCS) | |
| env: | |
| SSH_PRIVATE_KEY: ${{ secrets.SSH_PRIVATE_KEY }} | |
| SSH_KNOWN_HOSTS: ${{ secrets.SSH_KNOWN_HOSTS }} | |
| run: | | |
| mkdir -p ~/.ssh/ | |
| echo "$SSH_PRIVATE_KEY" > ~/.ssh/id_rsa | |
| sudo chmod 600 ~/.ssh/id_rsa | |
| echo "$SSH_KNOWN_HOSTS" > ~/.ssh/known_hosts | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Setup conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.PY }} | |
| channels: conda-forge | |
| - name: Install OpenMDAO | |
| run: | | |
| echo "Make sure we are not using anaconda packages" | |
| conda config --remove channels defaults | |
| conda install numpy=${{ matrix.NUMPY }} scipy=${{ matrix.SCIPY }} -q -y | |
| python -m pip install --upgrade pip | |
| echo "=============================================================" | |
| echo "Install OpenMDAO" | |
| echo "=============================================================" | |
| if [[ "${{ matrix.PEP517 }}" == "true" ]]; then | |
| pip wheel --no-deps --use-pep517 . | |
| WHEEL=`find openmdao-*.whl` | |
| echo "-----------------------------------------------------------" | |
| echo "Installing from wheel: $WHEEL" | |
| echo "-----------------------------------------------------------" | |
| python -m pip install $WHEEL${{ matrix.OPTIONAL }} | |
| else | |
| python -m pip install .${{ matrix.OPTIONAL }} | |
| fi | |
| - name: Install MacOS-specific dependencies | |
| if: matrix.OS == 'macos-13' | |
| run: | | |
| conda install swig | |
| - name: Install PETSc | |
| if: matrix.PETSc | |
| run: | | |
| echo "=============================================================" | |
| echo "Install compilers for PETSc" | |
| echo "=============================================================" | |
| if [[ "${{ matrix.OPENMPI }}" ]]; then | |
| COMPILERS="cython compilers openmpi-mpicc=${{ matrix.OPENMPI }}" | |
| else | |
| COMPILERS="cython compilers openmpi-mpicc" | |
| fi | |
| conda install $COMPILERS -q -y | |
| echo "=============================================================" | |
| echo "Install PETSc" | |
| echo "=============================================================" | |
| if [[ "${{ matrix.PETSc }}" == "3" ]]; then | |
| python -m pip install git+https://github.com/mpi4py/mpi4py | |
| python -m pip install petsc petsc4py | |
| else | |
| if [[ "${{ matrix.MPI4PY }}" ]]; then | |
| conda install mpi4py=${{ matrix.MPI4PY }} petsc4py=${{ matrix.PETSc }} -q -y | |
| else | |
| conda install mpi4py petsc4py=${{ matrix.PETSc }} -q -y | |
| fi | |
| fi | |
| echo "=============================================================" | |
| echo "Check MPI and PETSc installation" | |
| echo "=============================================================" | |
| export OMPI_MCA_rmaps_base_oversubscribe=1 | |
| export OMPI_MCA_btl=^openib | |
| echo "-----------------------" | |
| echo "Quick test of mpi4py:" | |
| mpirun -n 3 python -c "from mpi4py import MPI; print(f'Rank: {MPI.COMM_WORLD.rank}')" | |
| echo "-----------------------" | |
| echo "Quick test of petsc4py:" | |
| mpirun -n 3 python -c "import numpy; from mpi4py import MPI; comm = MPI.COMM_WORLD; \ | |
| import petsc4py; petsc4py.init(); \ | |
| x = petsc4py.PETSc.Vec().createWithArray(numpy.ones(5)*comm.rank, comm=comm); \ | |
| print(x.getArray())" | |
| echo "-----------------------" | |
| echo "OMPI_MCA_rmaps_base_oversubscribe=1" >> $GITHUB_ENV | |
| echo "OMPI_MCA_btl=^openib" >> $GITHUB_ENV | |
| echo "Workaround for intermittent failures with OMPI https://github.com/open-mpi/ompi/issues/7393" | |
| echo "TMPDIR=/tmp" >> $GITHUB_ENV | |
| - name: Install pyOptSparse | |
| if: matrix.PYOPTSPARSE | |
| run: | | |
| echo "=============================================================" | |
| echo "Install pyoptsparse" | |
| echo "=============================================================" | |
| if [[ "${{ matrix.PYOPTSPARSE }}" == "conda-forge" ]]; then | |
| if [[ "${{ matrix.SNOPT }}" ]]; then | |
| echo "SNOPT ${{ matrix.SNOPT }} was requested but is not available on conda-forge" | |
| fi | |
| conda install -c conda-forge pyoptsparse | |
| else | |
| python -m pip install git+https://github.com/OpenMDAO/build_pyoptsparse | |
| if [[ "${{ matrix.PYOPTSPARSE }}" == "latest" ]]; then | |
| function latest_version() { | |
| local REPO_URL=$1/releases/latest | |
| local LATEST_URL=`curl -fsSLI -o /dev/null -w %{url_effective} $REPO_URL` | |
| local LATEST_VER=`echo $LATEST_URL | awk '{split($0,a,"/tag/"); print a[2]}'` | |
| echo $LATEST_VER | |
| } | |
| BRANCH="-b $(latest_version https://github.com/mdolab/pyoptsparse)" | |
| else | |
| BRANCH="-b ${{ matrix.PYOPTSPARSE }}" | |
| fi | |
| if [[ "${{ matrix.PAROPT }}" ]]; then | |
| PAROPT="-a" | |
| fi | |
| if [[ "${{ matrix.SNOPT }}" == "7.7" && "${{ secrets.SNOPT_LOCATION_77 }}" ]]; then | |
| echo " > Secure copying SNOPT 7.7 over SSH" | |
| mkdir SNOPT | |
| scp -qr ${{ secrets.SNOPT_LOCATION_77 }} SNOPT | |
| SNOPT="-s SNOPT/src" | |
| elif [[ "${{ matrix.SNOPT }}" == "7.2" && "${{ secrets.SNOPT_LOCATION_72 }}" ]]; then | |
| echo " > Secure copying SNOPT 7.2 over SSH" | |
| mkdir SNOPT | |
| scp -qr ${{ secrets.SNOPT_LOCATION_72 }} SNOPT | |
| SNOPT="-s SNOPT/source" | |
| elif [[ "${{ matrix.SNOPT }}" ]]; then | |
| echo "SNOPT version ${{ matrix.SNOPT }} was requested but source is not available" | |
| fi | |
| build_pyoptsparse -v $BRANCH $PAROPT $SNOPT | |
| fi | |
| - name: Install optional dependencies | |
| if: matrix.OPTIONAL == '[all]' | |
| run: | | |
| echo "=============================================================" | |
| echo "Install additional packages for testing/coverage" | |
| echo "=============================================================" | |
| conda install graphviz | |
| python -m pip install pyparsing psutil objgraph pyxdsm pydot | |
| echo "Pre-install playwright dependencies to avoid 'Playwright Host validation warning'" | |
| playwright install --with-deps | |
| - name: Display environment info | |
| id: env_info | |
| continue-on-error: true | |
| run: | | |
| conda info | |
| conda list | |
| echo "=============================================================" | |
| echo "Check installed versions of Python, Numpy and Scipy" | |
| echo "=============================================================" | |
| echo 'errors<<EOF' >> $GITHUB_OUTPUT | |
| FINAL_VER=`python -c "import platform; print(platform.python_version())"` | |
| if [[ ! "$FINAL_VER" == "${{ matrix.PY }}"* ]]; then | |
| echo "Python version was changed from ${{ matrix.PY }} to $FINAL_VER" >> $GITHUB_OUTPUT | |
| fi | |
| FINAL_VER=`python -c "import numpy; print(numpy.__version__)"` | |
| if [[ ! "$FINAL_VER" == "${{ matrix.NUMPY }}"* ]]; then | |
| echo "NumPy version was changed from ${{ matrix.NUMPY }} to $FINAL_VER" >> $GITHUB_OUTPUT | |
| fi | |
| FINAL_VER=`python -c "import scipy; print(scipy.__version__)"` | |
| if [[ ! "$FINAL_VER" == "${{ matrix.SCIPY }}"* ]]; then | |
| echo "SciPy version was changed from ${{ matrix.SCIPY }} to $FINAL_VER" >> $GITHUB_OUTPUT | |
| fi | |
| echo 'EOF' >> $GITHUB_OUTPUT | |
| grep changed $GITHUB_OUTPUT || echo "" | |
| # Enable tmate debugging of manually-triggered workflows if the input option was provided | |
| # | |
| # To access the terminal through the web-interface: | |
| # 1. Click on the web-browser link printed out in this action from the github | |
| # workflow terminal | |
| # 2. Press cntrl + c in the new tab that opens up to reveal the terminal | |
| # 3. To activate the conda environment run: | |
| # $ source $CONDA/etc/profile.d/conda.sh | |
| # $ conda activate test | |
| - name: Setup tmate session | |
| if: ${{ inputs.debug_enabled }} | |
| uses: mxschmitt/action-tmate@v3 | |
| with: | |
| limit-access-to-actor: true | |
| - name: Run tests | |
| id: run_tests | |
| if: matrix.TESTS | |
| env: | |
| OPENMDAO_CHECK_ALL_PARTIALS: true | |
| run: | | |
| echo "=============================================================" | |
| echo "Run tests with coverage (from directory other than repo root)" | |
| echo "=============================================================" | |
| echo "############ .coveragerc contents #################" | |
| cat .coveragerc | |
| echo "###################################################" | |
| cp .coveragerc $HOME | |
| cd $HOME | |
| testflo -n 2 openmdao --timeout=240 --show_skipped --coverage --coverpkg openmdao --durations=20 | |
| - name: Submit coverage | |
| id: coveralls | |
| if: matrix.TESTS | |
| continue-on-error: true | |
| env: | |
| COVERALLS_REPO_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_SERVICE_NAME: "github" | |
| COVERALLS_PARALLEL: true | |
| run: | | |
| echo "=============================================================" | |
| echo "Submit coverage" | |
| echo "=============================================================" | |
| cp $HOME/.coverage . | |
| python -m pip install coveralls | |
| SITE_DIR=`python -c 'import site; print(site.getsitepackages()[-1])'` | |
| coveralls --basedir $SITE_DIR | |
| - name: Slack failure to upload to coveralls.io | |
| if: steps.coveralls.outcome == 'failure' | |
| uses: act10ns/[email protected] | |
| with: | |
| webhook-url: ${{ secrets.SLACK_WEBHOOK_URL }} | |
| status: 'warning' | |
| message: | | |
| Uploading of coverage data to coveralls.io failed. | |
| ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| - name: Build docs | |
| if: matrix.BUILD_DOCS | |
| id: build_docs | |
| run: | | |
| export OPENMDAO_REPORTS=0 | |
| export PYDEVD_DISABLE_FILE_VALIDATION=1 | |
| cd openmdao/docs | |
| if [[ "${{ secrets.SNOPT_LOCATION_72 }}" || "${{ secrets.SNOPT_LOCATION_77 }}" ]]; then | |
| echo "=============================================================" | |
| echo "Building docs with SNOPT examples." | |
| echo "=============================================================" | |
| else | |
| echo "=============================================================" | |
| echo "Disabling SNOPT cells in notebooks." | |
| echo "=============================================================" | |
| python openmdao_book/other/disable_snopt_cells.py | |
| fi | |
| # start ipcluster to run MPI under notebooks | |
| ./ipcluster_start.sh | |
| sleep 12 | |
| echo "=============================================================" | |
| echo "Build the docs" | |
| echo "=============================================================" | |
| python build_source_docs.py | |
| jupyter-book build -W --keep-going openmdao_book | |
| python copy_build_artifacts.py | |
| - name: Display doc build reports | |
| if: failure() && matrix.BUILD_DOCS && steps.build_docs.outcome == 'failure' | |
| run: | | |
| for f in $(find /home/runner/work/OpenMDAO/OpenMDAO/openmdao/docs/openmdao_book/_build/html/reports -name '*.log'); do | |
| echo "=============================================================" | |
| echo $f | |
| echo "=============================================================" | |
| cat $f | |
| done | |
| - name: Publish docs | |
| if: ${{ github.event_name != 'pull_request' && matrix.BUILD_DOCS }} | |
| env: | |
| DOCS_LOCATION: ${{ secrets.DOCS_LOCATION }} | |
| run: | | |
| if [[ "${#DOCS_LOCATION}" ]]; then | |
| echo "=============================================================" | |
| echo "Install version of openssl compatible with hosting service" | |
| echo "=============================================================" | |
| conda install -c conda-forge 'openssl=3.0' | |
| echo "=============================================================" | |
| echo "Fetch tags to get docs version" | |
| echo "=============================================================" | |
| git fetch --prune --unshallow --tags | |
| echo "=============================================================" | |
| echo "Publish docs" | |
| echo "=============================================================" | |
| cd openmdao/docs | |
| python upload_doc_version.py openmdao_book/_build/html/ ${{ secrets.DOCS_LOCATION }} | |
| else | |
| echo "Docs destination not available." | |
| fi | |
| - name: Scan for security issues | |
| if: matrix.BANDIT | |
| id: bandit | |
| continue-on-error: true | |
| run: | | |
| python -m pip install bandit | |
| echo "=============================================================" | |
| echo "Run bandit scan for high/medium severity issues" | |
| echo "=============================================================" | |
| cd $GITHUB_WORKSPACE | |
| python -m bandit -c bandit.yml -ll -r openmdao | |
| - name: Check NumPy 2.0 Compatibility | |
| run: | | |
| echo "=============================================================" | |
| echo "Check OpenMDAO code for NumPy 2.0 compatibility" | |
| echo "See: https://numpy.org/devdocs/numpy_2_0_migration_guide.html" | |
| echo "=============================================================" | |
| python -m pip install ruff | |
| ruff check . --select NPY201 | |
| - name: Perform linting with Ruff | |
| if: ${{ matrix.NAME == 'Ubuntu Baseline' }} | |
| run: | | |
| echo "=============================================================" | |
| echo "Lint OpenMDAO code per settings in pyproject.toml" | |
| echo "=============================================================" | |
| python -m pip install ruff | |
| ruff check . --config pyproject.toml | |
| - name: Slack env change | |
| if: steps.env_info.outputs.errors != '' | |
| uses: act10ns/[email protected] | |
| with: | |
| webhook-url: ${{ secrets.SLACK_WEBHOOK_URL }} | |
| status: 'warning' | |
| message: | | |
| Environment change detected on `${{ matrix.NAME }}` build. | |
| Python, NumPy or SciPy was not the requested version: | |
| ```${{steps.env_info.outputs.errors}}``` | |
| ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| - name: Slack unit test failure | |
| if: failure() && steps.run_tests.outcome == 'failure' | |
| uses: act10ns/[email protected] | |
| with: | |
| webhook-url: ${{ secrets.SLACK_WEBHOOK_URL }} | |
| status: ${{ steps.run_tests.outcome }} | |
| message: | |
| Unit testing failed on `${{ matrix.NAME }}` build. | |
| ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| - name: Slack doc build failure | |
| if: failure() && steps.build_docs.outcome == 'failure' | |
| uses: act10ns/[email protected] | |
| with: | |
| webhook-url: ${{ secrets.SLACK_WEBHOOK_URL }} | |
| status: ${{ steps.build_docs.outcome }} | |
| message: | | |
| Doc build failed on `${{ matrix.NAME }}` build. | |
| ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| - name: Slack security issue | |
| if: steps.bandit.outcome == 'failure' | |
| uses: act10ns/[email protected] | |
| with: | |
| webhook-url: ${{ secrets.SLACK_WEBHOOK_URL }} | |
| status: ${{ steps.bandit.outcome }} | |
| message: | |
| Security issue found on `${{ matrix.NAME }}` build. | |
| ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| - name: Fail the workflow if tests or doc build failed | |
| if: steps.run_tests.outcome == 'failure' || steps.build_docs.outcome == 'failure' | |
| uses: actions/github-script@v3 | |
| with: | |
| script: | | |
| let test_fail = ${{ steps.run_tests.outcome == 'failure' }}; | |
| let docs_fail = ${{ steps.build_docs.outcome == 'failure' }}; | |
| if (test_fail && docs_fail) { | |
| core.setFailed('Tests and doc build failed.'); | |
| } | |
| else if (test_fail) { | |
| core.setFailed('Tests failed.'); | |
| } | |
| else if (docs_fail) { | |
| core.setFailed('Doc build failed.'); | |
| } | |
| windows_tests: | |
| runs-on: windows-latest | |
| timeout-minutes: 60 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| # baseline versions | |
| - NAME: Windows Baseline | |
| PY: '3.12' | |
| NUMPY: '1.26' | |
| SCIPY: '1.13' | |
| PYOPTSPARSE: '2.11.0' | |
| BANDIT: true | |
| EXCLUDE: ${{ github.event_name == 'workflow_dispatch' && ! inputs.Windows_Baseline }} | |
| name: ${{ matrix.NAME }} | |
| defaults: | |
| run: | |
| shell: pwsh | |
| steps: | |
| - name: Display run details | |
| run: | | |
| echo "=============================================================" | |
| echo "Run #$env:GITHUB_RUN_NUMBER" | |
| echo "Run ID: $env:GITHUB_RUN_ID" | |
| echo "Testing: $env:GITHUB_REPOSITORY" | |
| echo "Triggered by: $env:GITHUB_EVENT_NAME" | |
| echo "Initiated by: $env:GITHUB_ACTOR" | |
| echo "=============================================================" | |
| - name: Exit if this job was excluded | |
| if: matrix.EXCLUDE | |
| uses: actions/github-script@v7 | |
| with: | |
| script: core.setFailed('The ${{ matrix.NAME }} job was excluded from the run, exiting...'); | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Setup conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.PY }} | |
| channels: conda-forge | |
| - name: Install OpenDMAO | |
| run: | | |
| conda install numpy=${{ matrix.NUMPY }} scipy=${{ matrix.SCIPY }} -q -y | |
| python -m pip install --upgrade pip | |
| echo "=============================================================" | |
| echo "Install mkl 2024.1.0 (test failure with 2024.2.2)" | |
| echo "=============================================================" | |
| conda install mkl=2024.1.0 | |
| echo "=============================================================" | |
| echo "Install OpenMDAO" | |
| echo "=============================================================" | |
| python -m pip install .[all] | |
| - name: Install pyOptSparse | |
| if: matrix.PYOPTSPARSE | |
| run: | | |
| echo "=============================================================" | |
| echo "Install pyoptsparse from conda-forge" | |
| echo "=============================================================" | |
| conda install -c conda-forge pyoptsparse=${{ matrix.PYOPTSPARSE }} -q -y | |
| - name: Install optional dependencies | |
| run: | | |
| echo "=============================================================" | |
| echo "Install additional packages for testing/coverage" | |
| echo "=============================================================" | |
| python -m pip install psutil objgraph git+https://github.com/mdolab/pyxdsm | |
| - name: Display environment info | |
| run: | | |
| conda info | |
| conda list | |
| echo "=============================================================" | |
| echo "Check installed versions of Python, Numpy and Scipy" | |
| echo "=============================================================" | |
| python -c "import sys; assert str(sys.version).startswith(str(${{ matrix.PY }})), \ | |
| f'Python version {sys.version} is not the requested version (${{ matrix.PY }})'" | |
| python -c "import numpy; assert str(numpy.__version__).startswith(str(${{ matrix.NUMPY }})), \ | |
| f'Numpy version {numpy.__version__} is not the requested version (${{ matrix.NUMPY }})'" | |
| python -c "import scipy; assert str(scipy.__version__).startswith(str(${{ matrix.SCIPY }})), \ | |
| f'Scipy version {scipy.__version__} is not the requested version (${{ matrix.SCIPY }})'" | |
| - name: Run tests | |
| env: | |
| OPENMDAO_CHECK_ALL_PARTIALS: true | |
| run: | | |
| echo "=============================================================" | |
| echo "Run tests with coverage (from directory other than repo root)" | |
| echo "=============================================================" | |
| copy .coveragerc $HOME | |
| cd $HOME | |
| Set-DisplayResolution -Width 1920 -Height 1080 -Force | |
| testflo -n 2 openmdao --timeout=240 --show_skipped --coverage --coverpkg openmdao --durations=20 | |
| - name: Slack unit test failure | |
| if: failure() && steps.run_tests.outcome == 'failure' | |
| uses: act10ns/[email protected] | |
| with: | |
| webhook-url: ${{ secrets.SLACK_WEBHOOK_URL }} | |
| status: ${{ steps.run_tests.outcome }} | |
| message: | |
| Unit testing failed on `${{ matrix.NAME }}` build. | |
| ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| - name: Submit coverage | |
| id: coveralls | |
| continue-on-error: true | |
| env: | |
| COVERALLS_REPO_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_SERVICE_NAME: "github" | |
| COVERALLS_PARALLEL: true | |
| run: | | |
| echo "=============================================================" | |
| echo "Submit coverage" | |
| echo "=============================================================" | |
| copy $HOME\.coverage . | |
| python -m pip install coveralls | |
| $SITE_DIR=python -c "import site; print(site.getsitepackages()[-1].replace('lib\\site-', 'Lib\\site-'))" | |
| coveralls --basedir $SITE_DIR | |
| - name: Slack failure to upload to coveralls.io | |
| if: steps.coveralls.outcome == 'failure' | |
| uses: act10ns/[email protected] | |
| with: | |
| webhook-url: ${{ secrets.SLACK_WEBHOOK_URL }} | |
| status: 'warning' | |
| message: | | |
| Uploading of coverage data to coveralls.io failed. | |
| ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| - name: Scan for security issues | |
| if: matrix.BANDIT | |
| id: bandit | |
| run: | | |
| python -m pip install bandit | |
| echo "=============================================================" | |
| echo "Run bandit scan for high/medium severity issues" | |
| echo "=============================================================" | |
| cd ${{ github.workspace }} | |
| python -m bandit -c bandit.yml -ll -r openmdao | |
| coveralls: | |
| name: Finish coverage | |
| needs: [tests, windows_tests] | |
| runs-on: ubuntu-latest | |
| continue-on-error: true | |
| steps: | |
| - uses: coverallsapp/github-action@master | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| parallel-finished: true | |
| related_tests: | |
| name: Run Dymos & pyCycle Tests | |
| needs: [tests, windows_tests] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: benc-uk/workflow-dispatch@v1 | |
| with: | |
| workflow: Dymos Tests | |
| repo: ${{ github.repository_owner }}/dymos | |
| inputs: > | |
| { | |
| "run_name": "Test Latest OpenMDAO Development Version", | |
| "latest": true | |
| } | |
| token: ${{ secrets.ACCESS_TOKEN }} | |
| if: github.event_name == 'push' | |
| - uses: benc-uk/workflow-dispatch@v1 | |
| with: | |
| workflow: pyCycle Tests | |
| repo: ${{ github.repository_owner }}/pycycle | |
| inputs: > | |
| { | |
| "run_name": "Test Latest OpenMDAO Development Version", | |
| "Ubuntu_Baseline": false, | |
| "MacOS_Baseline": false, | |
| "Windows_Baseline": false, | |
| "OpenMDAO_Dev": true | |
| } | |
| token: ${{ secrets.ACCESS_TOKEN }} | |
| if: github.event_name == 'push' |