latest py313 #531
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| # Run OpenMDAO tests on latest/pre-release versions | |
| name: OpenMDAO Latest | |
| on: | |
| # Run the workflow every Monday and Thursday at 0400 UTC | |
| schedule: | |
| - cron: '0 4 * * 1,4' | |
| # Allow running the workflow manually from the Actions tab | |
| workflow_dispatch: | |
| inputs: | |
| run_name: | |
| description: 'Name of workflow run as it will appear under Actions tab (optional):' | |
| type: string | |
| required: false | |
| default: '' | |
| job_name: | |
| description: 'Select a job from the matrix to run (default: all jobs)' | |
| type: choice | |
| options: | |
| - '' | |
| - 'Ubuntu Latest, NumPy<2' | |
| - 'Ubuntu Latest, NumPy 2 (No PETSc/pyOptSparse)' | |
| - 'MacOS Latest, NumPy<2' | |
| - 'MacOS Latest, NumPy 2 (No PETSc/pyOptSparse)' | |
| required: false | |
| default: '' | |
| debug_enabled: | |
| description: 'Run the build with tmate debugging enabled (https://github.com/marketplace/actions/debugging-with-tmate)' | |
| type: boolean | |
| required: false | |
| default: false | |
| run-name: ${{ inputs.run_name }} | |
| permissions: {} | |
| jobs: | |
| tests: | |
| timeout-minutes: 120 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| # test latest versions on ubuntu | |
| # Include pyOptSparse, which requires NumPy<2 | |
| - NAME: Ubuntu Latest, NumPy<2 | |
| OS: ubuntu-latest | |
| PY: '3.12' | |
| NUMPY: '<2' | |
| PETSc: true | |
| PYOPTSPARSE: true | |
| SNOPT: true | |
| BANDIT: true | |
| BUILD_DOCS: true | |
| # test latest versions on ubuntu | |
| # Exclude pyOptSparse, which requires NumPy<2 | |
| # NumPy>=2.1 is required with Python 3.13 | |
| - NAME: Ubuntu Latest, NumPy 2 (No pyOptSparse) | |
| OS: ubuntu-latest | |
| PY: '3.13' | |
| NUMPY: '>=2.1' | |
| PETSc: true | |
| # test latest versions on macos | |
| # Include pyOptSparse, which requires NumPy<2 | |
| - NAME: MacOS Latest, NumPy<2 | |
| OS: macos-13 | |
| PY: '3.12' | |
| NUMPY: '<2' | |
| PETSc: true | |
| PYOPTSPARSE: true | |
| # test latest versions on macos | |
| # Exclude pyOptSparse, which require NumPy<2 | |
| # NumPy>=2.1 is required with Python 3.13 | |
| - NAME: MacOS Latest, NumPy 2 (No pyOptSparse) | |
| OS: macos-13 | |
| PY: '3.13' | |
| NUMPY: '>=2.1' | |
| PETSc: true | |
| runs-on: ${{ matrix.OS }} | |
| name: ${{ matrix.NAME }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Display run details | |
| run: | | |
| echo "=============================================================" | |
| echo "Run #${GITHUB_RUN_NUMBER}" | |
| echo "Run ID: ${GITHUB_RUN_ID}" | |
| echo "Testing: ${GITHUB_REPOSITORY}" | |
| echo "Branch: ${GITHUB_BASE_REF}" | |
| echo "Triggered by: ${GITHUB_EVENT_NAME}" | |
| echo "Initiated by: ${GITHUB_ACTOR}" | |
| echo "=============================================================" | |
| - name: Exit if this job was not selected | |
| if: github.event_name == 'workflow_dispatch' && inputs.job_name != '' && inputs.job_name != matrix.NAME | |
| uses: actions/github-script@v7 | |
| with: | |
| script: core.setFailed('The ${{ matrix.NAME }} job was not included in the run, exiting...'); | |
| - name: Create SSH key | |
| if: (matrix.SNOPT || matrix.BUILD_DOCS) | |
| env: | |
| SSH_PRIVATE_KEY: ${{ secrets.SSH_PRIVATE_KEY }} | |
| SSH_KNOWN_HOSTS: ${{ secrets.SSH_KNOWN_HOSTS }} | |
| run: | | |
| mkdir -p ~/.ssh/ | |
| echo "$SSH_PRIVATE_KEY" > ~/.ssh/id_rsa | |
| sudo chmod 600 ~/.ssh/id_rsa | |
| echo "$SSH_KNOWN_HOSTS" > ~/.ssh/known_hosts | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Setup conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.PY }} | |
| miniforge-version: latest | |
| - name: Install MacOS-specific dependencies | |
| if: matrix.OS == 'macos-13' | |
| run: | | |
| conda install compilers swig | |
| - name: Install NumPy/SciPy | |
| run: | | |
| echo "=============================================================" | |
| echo "Install latest versions of NumPy/SciPy" | |
| echo "=============================================================" | |
| python -m pip install --upgrade --pre "numpy${{ matrix.NUMPY }}" | |
| python -m pip install --upgrade --pre scipy | |
| # remember versions so we can check them later | |
| NUMPY_VER=`python -c "import numpy; print(numpy.__version__)"` | |
| SCIPY_VER=`python -c "import scipy; print(scipy.__version__)"` | |
| echo "NUMPY_VER=$NUMPY_VER" >> $GITHUB_ENV | |
| echo "SCIPY_VER=$SCIPY_VER" >> $GITHUB_ENV | |
| - name: Install PETSc | |
| if: ${{ matrix.PETSC }} | |
| run: | | |
| echo "=============================================================" | |
| echo "Install latest PETSc" | |
| echo "=============================================================" | |
| if [[ "${{ matrix.NUMPY }}" == "<2" ]]; then | |
| conda install mpich mpi4py petsc4py=3.21.2 -q -y | |
| else | |
| conda install mpich mpi4py petsc4py -q -y | |
| fi | |
| echo "=============================================================" | |
| echo "Check MPI and PETSc installation" | |
| echo "=============================================================" | |
| export OMPI_MCA_rmaps_base_oversubscribe=1 | |
| export OMPI_MCA_btl=^openib | |
| echo "OMPI_MCA_rmaps_base_oversubscribe=1" >> $GITHUB_ENV | |
| echo "OMPI_MCA_btl=^openib" >> $GITHUB_ENV | |
| echo "-----------------------" | |
| echo "Quick test of mpi4py:" | |
| mpirun -n 3 python -c "from mpi4py import MPI; print(f'Rank: {MPI.COMM_WORLD.rank}')" | |
| echo "-----------------------" | |
| echo "Quick test of petsc4py:" | |
| mpirun -n 3 python -c "import numpy; from mpi4py import MPI; comm = MPI.COMM_WORLD; \ | |
| import petsc4py; petsc4py.init(); \ | |
| x = petsc4py.PETSc.Vec().createWithArray(numpy.ones(5)*comm.rank, comm=comm); \ | |
| print(x.getArray())" | |
| echo "-----------------------" | |
| - name: Install latest versions of [all] openmdao dependencies | |
| run: | | |
| source .github/scripts/install_latest_deps.sh | |
| - name: Install pyOptSparse | |
| if: ${{ matrix.PYOPTSPARSE }} | |
| run: | | |
| echo "=============================================================" | |
| echo "Define useful functions" | |
| echo "=============================================================" | |
| function latest_version() { | |
| local REPO_URL=$1/releases/latest | |
| local LATEST_URL=`curl -fsSLI -o /dev/null -w %{url_effective} $REPO_URL` | |
| local LATEST_VER=`echo $LATEST_URL | awk '{split($0,a,"/tag/"); print a[2]}'` | |
| echo $LATEST_VER | |
| } | |
| function latest_branch() { | |
| local LATEST_VER=$(latest_version $1) | |
| echo git+$1@$LATEST_VER | |
| } | |
| echo "=============================================================" | |
| echo "Install latest pyoptsparse" | |
| echo "=============================================================" | |
| python -m pip install git+https://github.com/OpenMDAO/build_pyoptsparse | |
| BRANCH="-b $(latest_version https://github.com/mdolab/pyoptsparse)" | |
| if [[ "${{ matrix.SNOPT }}" ]]; then | |
| if [[ "${{ secrets.SNOPT_LOCATION_77 }}" ]]; then | |
| echo " > Secure copying SNOPT 7.7 over SSH" | |
| mkdir SNOPT | |
| scp -qr ${{ secrets.SNOPT_LOCATION_77 }} SNOPT | |
| SNOPT="-s SNOPT/src" | |
| else | |
| echo "SNOPT source is not available" | |
| fi | |
| fi | |
| build_pyoptsparse $BRANCH $SNOPT | |
| - name: Install OpenMDAO | |
| run: | | |
| echo "=============================================================" | |
| echo "Install OpenMDAO" | |
| echo "=============================================================" | |
| if [[ "${{ matrix.NUMPY }}" == "" ]]; then | |
| sed -i.bak 's/numpy<2/numpy/g' pyproject.toml | |
| grep numpy pyproject.toml | |
| fi | |
| python -m pip install . | |
| - name: Display environment info | |
| id: env_info | |
| if: always() | |
| continue-on-error: true | |
| run: | | |
| conda info | |
| conda list | |
| echo "=============================================================" | |
| echo "Check installed versions of Python, Numpy and Scipy" | |
| echo "=============================================================" | |
| echo 'errors<<EOF' >> $GITHUB_OUTPUT | |
| FINAL_VER=`python -c "import platform; print(platform.python_version())"` | |
| if [[ ! "$FINAL_VER" == "${{ matrix.PY }}"* ]]; then | |
| echo "Python version was changed from ${{ matrix.PY }} to $FINAL_VER" >> $GITHUB_OUTPUT | |
| fi | |
| FINAL_VER=`python -c "import numpy; print(numpy.__version__)"` | |
| if [[ ! "$FINAL_VER" == "$NUMPY_VER"* ]]; then | |
| echo "NumPy version was changed from $NUMPY_VER to $FINAL_VER" >> $GITHUB_OUTPUT | |
| fi | |
| FINAL_VER=`python -c "import scipy; print(scipy.__version__)"` | |
| if [[ ! "$FINAL_VER" == "$SCIPY_VER"* ]]; then | |
| echo "SciPy version was changed from $SCIPY_VER to $FINAL_VER" >> $GITHUB_OUTPUT | |
| fi | |
| echo 'EOF' >> $GITHUB_OUTPUT | |
| grep changed $GITHUB_OUTPUT || echo "" | |
| # Enable tmate debugging of manually-triggered workflows if the input option was provided | |
| # | |
| # To access the terminal through the web-interface: | |
| # 1. Click on the web-browser link printed out in this action from the github | |
| # workflow terminal | |
| # 2. Press cntrl + c in the new tab that opens up to reveal the terminal | |
| # 3. To activate the conda environment run: | |
| # $ source $CONDA/etc/profile.d/conda.sh | |
| # $ conda activate test | |
| - name: Setup tmate session | |
| uses: mxschmitt/action-tmate@v3 | |
| if: ${{ github.event_name == 'workflow_dispatch' && inputs.debug_enabled }} | |
| with: | |
| limit-access-to-actor: true | |
| - name: Run tests | |
| id: run_tests | |
| continue-on-error: true | |
| run: | | |
| echo "=============================================================" | |
| echo "Run tests (from directory other than repo root)" | |
| echo "=============================================================" | |
| cd $HOME | |
| RPT_FILE=`pwd`/deprecations.txt | |
| echo "RPT_FILE=$RPT_FILE" >> $GITHUB_ENV | |
| testflo -n 1 openmdao --timeout=240 --deprecations_report=$RPT_FILE --exclude=test_warnings_filters | |
| - name: Build docs | |
| id: build_docs | |
| if: matrix.BUILD_DOCS | |
| continue-on-error: true | |
| run: | | |
| export OPENMDAO_REPORTS=0 | |
| export PYDEVD_DISABLE_FILE_VALIDATION=1 | |
| cd openmdao/docs | |
| if [[ "${{ secrets.SNOPT_LOCATION_77 }}" ]]; then | |
| echo "=============================================================" | |
| echo "Building docs with SNOPT examples." | |
| echo "=============================================================" | |
| else | |
| echo "=============================================================" | |
| echo "Disabling SNOPT cells in notebooks." | |
| echo "=============================================================" | |
| python openmdao_book/other/disable_snopt_cells.py | |
| fi | |
| echo "=============================================================" | |
| echo "Starting ipcluster to run MPI under notebooks" | |
| echo "=============================================================" | |
| ./ipcluster_start.sh | |
| sleep 12 | |
| echo "=============================================================" | |
| echo "Building the docs" | |
| echo "=============================================================" | |
| echo "building source docs..." | |
| python build_source_docs.py | |
| echo "building book..." | |
| jupyter-book build -W --keep-going openmdao_book | |
| echo "copying build artifacts..." | |
| python copy_build_artifacts.py | |
| - name: Display doc build reports | |
| if: steps.build_docs.outcome == 'failure' | |
| continue-on-error: true | |
| run: | | |
| for f in $(find /home/runner/work/OpenMDAO/OpenMDAO/openmdao/docs/openmdao_book/_build/html/reports -name '*.log'); do | |
| echo "=============================================================" | |
| echo $f | |
| echo "=============================================================" | |
| cat $f | |
| done | |
| - name: Deprecations Report | |
| id: deprecations_report | |
| continue-on-error: true | |
| run: | | |
| echo "=============================================================" | |
| echo "Display deprecations report" | |
| echo "=============================================================" | |
| cat $RPT_FILE | |
| echo 'summary<<EOF' >> $GITHUB_OUTPUT | |
| head -n 6 $RPT_FILE | cut -d':' -f 1 >> $GITHUB_OUTPUT | |
| echo 'EOF' >> $GITHUB_OUTPUT | |
| grep '^0 unique deprecation warnings' $RPT_FILE | |
| - name: Scan for security issues | |
| if: matrix.BANDIT | |
| id: bandit | |
| continue-on-error: true | |
| run: | | |
| python -m pip install bandit | |
| echo "=============================================================" | |
| echo "Run bandit scan for high/medium severity issues" | |
| echo "=============================================================" | |
| cd ${{ github.workspace }} | |
| python -m bandit -c bandit.yml -ll -r openmdao | |
| - name: Slack security issue | |
| if: steps.bandit.outcome == 'failure' | |
| uses: act10ns/[email protected] | |
| with: | |
| webhook-url: ${{ secrets.SLACK_WEBHOOK_URL }} | |
| status: 'warning' | |
| message: | |
| Security issue found on `${{ matrix.NAME }}` build. | |
| ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| - name: Check NumPy 2.0 Compatibility | |
| run: | | |
| echo "=============================================================" | |
| echo "Check OpenMDAO code for NumPy 2.0 compatibility" | |
| echo "See: https://numpy.org/devdocs/numpy_2_0_migration_guide.html" | |
| echo "=============================================================" | |
| python -m pip install ruff | |
| cd ${{ github.workspace }} | |
| ruff check . --select NPY201 | |
| - name: Slack env change | |
| if: steps.env_info.outputs.errors != '' | |
| uses: act10ns/[email protected] | |
| with: | |
| webhook-url: ${{ secrets.SLACK_WEBHOOK_URL }} | |
| status: 'warning' | |
| message: | | |
| Environment change detected on `${{ matrix.NAME }}` build. | |
| Python, NumPy or SciPy was not the requested version: | |
| ```${{steps.env_info.outputs.errors}}``` | |
| ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| - name: Slack unit test failure | |
| if: steps.run_tests.outcome == 'failure' | |
| uses: act10ns/[email protected] | |
| with: | |
| webhook-url: ${{ secrets.SLACK_WEBHOOK_URL }} | |
| status: ${{ steps.run_tests.outcome }} | |
| message: | |
| Unit testing failed on `${{ matrix.NAME }}` build. | |
| ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| - name: Slack doc build failure | |
| if: steps.build_docs.outcome == 'failure' | |
| uses: act10ns/[email protected] | |
| with: | |
| webhook-url: ${{ secrets.SLACK_WEBHOOK_URL }} | |
| status: ${{ steps.build_docs.outcome }} | |
| message: | | |
| Doc build failed on `${{ matrix.NAME }}` build. | |
| ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| - name: Slack deprecation warnings | |
| if: steps.deprecations_report.outcome == 'failure' | |
| uses: act10ns/[email protected] | |
| with: | |
| webhook-url: ${{ secrets.SLACK_WEBHOOK_URL }} | |
| status: 'warning' | |
| message: | | |
| Deprecations were detected on `${{ matrix.NAME }}` build. | |
| ```${{ steps.deprecations_report.outputs.summary }}``` | |
| ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| - name: Fail the workflow if tests or doc build failed | |
| if: steps.run_tests.outcome == 'failure' || steps.build_docs.outcome == 'failure' | |
| uses: actions/github-script@v3 | |
| with: | |
| script: | | |
| let test_fail = ${{ steps.run_tests.outcome == 'failure' }}; | |
| let docs_fail = ${{ steps.build_docs.outcome == 'failure' }}; | |
| if (test_fail && docs_fail) { | |
| core.setFailed('Tests and doc build failed.'); | |
| } | |
| else if (test_fail) { | |
| core.setFailed('Tests failed.'); | |
| } | |
| else if (docs_fail) { | |
| core.setFailed('Doc build failed.'); | |
| } |