WFU_Bioinformatics

Natural Language Processing and Deep Learning in order to determine smoking status

NLP Pipeline for determining smoking status based on patient progress notes

Progress notes and labels not included in code

Google News Vectors need to be downloaded from another source

Name		Name	Last commit message	Last commit date
Latest commit History 132 Commits
Models		Models
CleanLabels.py		CleanLabels.py
CleanNotes.py		CleanNotes.py
CreateConcepts.py		CreateConcepts.py
Embedd2v.py		Embedd2v.py
HanModel.py		HanModel.py
HanPrep.py		HanPrep.py
MLmodel		MLmodel
MakeFiles.py		MakeFiles.py
README.md		README.md
ReadData.py		ReadData.py
ReadSmokeData.py		ReadSmokeData.py
ToHdf.py		ToHdf.py
WordEmbed.py		WordEmbed.py
ann_model.pckl		ann_model.pckl
cnn.py		cnn.py
cnn_grid.py		cnn_grid.py
conda.yaml		conda.yaml
ensemble.py		ensemble.py
graphs.py		graphs.py
lstmb.py		lstmb.py
lstmb_grid.py		lstmb_grid.py
lstmu.py		lstmu.py
lstmu_grid.py		lstmu_grid.py
success.py		success.py
testMODEL.pckl		testMODEL.pckl
the_model.pckl		the_model.pckl

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