Pinned Loading

1. McSwan McSwan Public

   Multiple-collision Coalescent SWeep ANalyzer. McSwan is a R package to infer the extent and the dynamics of natural selection in the genomes of single or multiple populations.

   HTML 1 2

2. foldSFS-cpp foldSFS-cpp Public

   Script to fold probabilistic 2D joint site frequency spectra (cf ANGSD), where the minor allele is defined as the allele with lowest count across the two populations.

   C

3. itara itara Public

   Repository of various functions and scripts.

   Python

4. vanaprabhava vanaprabhava Public

   Method to simulate species abundance spectra in a metacommunity using a modified Kingman coalescent.

   R

5. Probabilistic-Neanderthal-admixture-dating Probabilistic-Neanderthal-admixture-dating Public

   Method for estimating the age of admixture using a single diploid sample and genotype likelihoods.

   Python 2 1

6. ASCEND ASCEND Public

   Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.

   Python 8 1