Generated new Bazel BUILD files and hand-corrected core's BUILD (#322)

stripe · Jan 31, 2019 · 311d071 · 311d071
1 parent bc3195e
commit 311d071
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Showing 9 changed files with 77 additions and 13 deletions.
diff --git a/WORKSPACE b/WORKSPACE
@@ -36,7 +36,7 @@ bind(
 )
 scala_maven_import_external(
   name = 'com_cibo_evilplot_2_12',
-  artifact = 'com.cibo:evilplot_2.12:0.2.0',
+  artifact = 'com.cibo:evilplot_2.12:0.6.0',
   licenses = [],
   server_urls = [
     'https://repo1.maven.org/maven2/',
@@ -48,6 +48,34 @@ bind(
   name = 'jar/com/cibo/evilplot_2_12',
   actual = '@com_cibo_evilplot_2_12//jar'
 )
+scala_maven_import_external(
+  name = 'com_google_code_findbugs_jsr305',
+  artifact = 'com.google.code.findbugs:jsr305:3.0.1',
+  licenses = [],
+  server_urls = [
+    'https://repo1.maven.org/maven2/',
+    'https://dl.bintray.com/cibotech/public/',
+    'http://dl.bintray.com/tpolecat/maven',
+  ]
+)
+bind(
+  name = 'jar/com/google/code/findbugs/jsr305',
+  actual = '@com_google_code_findbugs_jsr305//jar'
+)
+scala_maven_import_external(
+  name = 'com_google_flogger_flogger',
+  artifact = 'com.google.flogger:flogger:0.3.1',
+  licenses = [],
+  server_urls = [
+    'https://repo1.maven.org/maven2/',
+    'https://dl.bintray.com/cibotech/public/',
+    'http://dl.bintray.com/tpolecat/maven',
+  ]
+)
+bind(
+  name = 'jar/com/google/flogger/flogger',
+  actual = '@com_google_flogger_flogger//jar'
+)
 scala_maven_import_external(
   name = 'io_circe_circe_core_2_12',
   artifact = 'io.circe:circe-core_2.12:0.9.0',
@@ -260,7 +288,7 @@ bind(
 )
 scala_maven_import_external(
   name = 'org_scala_lang_scala_reflect',
-  artifact = 'org.scala-lang:scala-reflect:2.12.4',
+  artifact = 'org.scala-lang:scala-reflect:2.12.8',
   licenses = [],
   server_urls = [
     'https://repo1.maven.org/maven2/',

diff --git a/rainier-benchmark/BUILD b/rainier-benchmark/BUILD
@@ -8,6 +8,8 @@ load(
 scala_library(
   name = 'rainierBenchmark',
   deps = [
+    '//external:jar/com/google/code/findbugs/jsr305',
+    '//external:jar/com/google/flogger/flogger',
     '//external:jar/net/sf/jopt/simple/jopt_simple',
     '//external:jar/org/apache/commons/commons_math3',
     '//external:jar/org/openjdk/jmh/jmh_core',
@@ -24,6 +26,7 @@ scala_library(
     '//visibility:public',
   ],
   srcs = [
-    'src/main/scala/com/stripe/rainier/bench/RealBenchmark.scala',
+    'src/main/scala/com/stripe/rainier/bench/SBCBenchmark.scala',
+    'src/main/scala/com/stripe/rainier/bench/RegressionBenchmark.scala',
   ]
 )
diff --git a/rainier-cats/BUILD b/rainier-cats/BUILD
@@ -8,6 +8,8 @@ load(
 scala_library(
   name = 'rainierCats',
   deps = [
+    '//external:jar/com/google/code/findbugs/jsr305',
+    '//external:jar/com/google/flogger/flogger',
     '//external:jar/org/scala/lang/scala_reflect',
     '//external:jar/org/typelevel/cats_core_2_12',
     '//external:jar/org/typelevel/cats_kernel_2_12',

diff --git a/rainier-core/BUILD b/rainier-core/BUILD
@@ -10,64 +10,78 @@ scala_library(
   deps = [
     '//.rainier-shaded-asm:asmShaded',
     '//.rainier-shaded-asm:asmTreeShaded',
+    '//external:jar/com/google/flogger/flogger',
+
+  ],
+  runtime_deps = [
+    '//external:jar/com/google/flogger/flogger_system_backend',
+    '//external:jar/com/google/code/findbugs/jsr305',
   ],
-  runtime_deps = [],
   exports = [],
   visibility = [
     '//visibility:public',
   ],
   srcs = [
-    'src/main/scala/com/stripe/rainier/unused.scala',
     'src/main/scala/com/stripe/rainier/core/Discrete.scala',
     'src/main/scala/com/stripe/rainier/core/RandomVariable.scala',
     'src/main/scala/com/stripe/rainier/core/Combinatorics.scala',
     'src/main/scala/com/stripe/rainier/core/Continuous.scala',
+    'src/main/scala/com/stripe/rainier/core/Log.scala',
     'src/main/scala/com/stripe/rainier/core/Generator.scala',
     'src/main/scala/com/stripe/rainier/core/Injection.scala',
     'src/main/scala/com/stripe/rainier/core/Predictor.scala',
-    'src/main/scala/com/stripe/rainier/core/Mapping.scala',
     'src/main/scala/com/stripe/rainier/core/Support.scala',
     'src/main/scala/com/stripe/rainier/core/Distribution.scala',
     'src/main/scala/com/stripe/rainier/core/Categorical.scala',
-    'src/main/scala/com/stripe/rainier/core/Placeholder.scala',
     'src/main/scala/com/stripe/rainier/core/SBC.scala',
     'src/main/scala/com/stripe/rainier/core/Likelihood.scala',
     'src/main/scala/com/stripe/rainier/ir/ExprMethodGenerator.scala',
-    'src/main/scala/com/stripe/rainier/ir/ApplyClassGenerator.scala',
+    'src/main/scala/com/stripe/rainier/ir/OutputClassGenerator.scala',
     'src/main/scala/com/stripe/rainier/ir/VarType.scala',
     'src/main/scala/com/stripe/rainier/ir/Ops.scala',
+    'src/main/scala/com/stripe/rainier/ir/OutputMethodGenerator.scala',
+    'src/main/scala/com/stripe/rainier/ir/Log.scala',
+    'src/main/scala/com/stripe/rainier/ir/IRViz.scala',
     'src/main/scala/com/stripe/rainier/ir/CompiledFunction.scala',
     'src/main/scala/com/stripe/rainier/ir/GeneratedClassLoader.scala',
+    'src/main/scala/com/stripe/rainier/ir/GraphViz.scala',
     'src/main/scala/com/stripe/rainier/ir/ExprClassGenerator.scala',
     'src/main/scala/com/stripe/rainier/ir/MethodGenerator.scala',
-    'src/main/scala/com/stripe/rainier/ir/ApplyMethodGenerator.scala',
     'src/main/scala/com/stripe/rainier/ir/ClassGenerator.scala',
     'src/main/scala/com/stripe/rainier/ir/IR.scala',
-    'src/main/scala/com/stripe/rainier/ir/Tracer.scala',
+    'src/main/scala/com/stripe/rainier/ir/DataFunction.scala',
     'src/main/scala/com/stripe/rainier/ir/Packer.scala',
     'src/main/scala/com/stripe/rainier/repl/DensityPlot.scala',
     'src/main/scala/com/stripe/rainier/repl/package.scala',
     'src/main/scala/com/stripe/rainier/compute/PartialEvaluator.scala',
+    'src/main/scala/com/stripe/rainier/compute/Coefficients.scala',
     'src/main/scala/com/stripe/rainier/compute/Evaluator.scala',
+    'src/main/scala/com/stripe/rainier/compute/Log.scala',
     'src/main/scala/com/stripe/rainier/compute/Target.scala',
     'src/main/scala/com/stripe/rainier/compute/Recording.scala',
     'src/main/scala/com/stripe/rainier/compute/Translator.scala',
     'src/main/scala/com/stripe/rainier/compute/Real.scala',
+    'src/main/scala/com/stripe/rainier/compute/RealViz.scala',
+    'src/main/scala/com/stripe/rainier/compute/Encoder.scala',
+    'src/main/scala/com/stripe/rainier/compute/ToMap.scala',
     'src/main/scala/com/stripe/rainier/compute/LogLineOps.scala',
     'src/main/scala/com/stripe/rainier/compute/RealOps.scala',
-    'src/main/scala/com/stripe/rainier/compute/Context.scala',
     'src/main/scala/com/stripe/rainier/compute/Compiler.scala',
     'src/main/scala/com/stripe/rainier/compute/Gradient.scala',
     'src/main/scala/com/stripe/rainier/compute/LineOps.scala',
-    'src/main/scala/com/stripe/rainier/compute/ToMap.scala',
     'src/main/scala/com/stripe/rainier/compute/ToReal.scala',
     'src/main/scala/com/stripe/rainier/sampler/DualAvg.scala',
+    'src/main/scala/com/stripe/rainier/sampler/DensityFunction.scala',
     'src/main/scala/com/stripe/rainier/sampler/Walkers.scala',
+    'src/main/scala/com/stripe/rainier/sampler/Log.scala',
+    'src/main/scala/com/stripe/rainier/sampler/Ehmc.scala',
     'src/main/scala/com/stripe/rainier/sampler/MAP.scala',
     'src/main/scala/com/stripe/rainier/sampler/LeapFrog.scala',
     'src/main/scala/com/stripe/rainier/sampler/WalkersChain.scala',
     'src/main/scala/com/stripe/rainier/sampler/RNG.scala',
     'src/main/scala/com/stripe/rainier/sampler/Sampler.scala',
     'src/main/scala/com/stripe/rainier/sampler/HMC.scala',
+    'src/main/scala/com/stripe/rainier/unused.scala',
+    'src/main/scala/com/stripe/rainier/log/Logger.scala',
   ]
 )
diff --git a/rainier-docs/BUILD b/rainier-docs/BUILD
@@ -8,7 +8,10 @@ load(
 scala_library(
   name = 'rainierDocs',
   deps = [
+    '//external:jar/com/google/code/findbugs/jsr305',
+    '//external:jar/com/google/flogger/flogger',
     '//rainier-core:rainierCore',
+    '//rainier-trace:rainierTrace',
   ],
   runtime_deps = [],
   exports = [],

diff --git a/rainier-example/BUILD b/rainier-example/BUILD
@@ -10,6 +10,8 @@ scala_library(
   deps = [
     '//external:jar/com/chuusai/shapeless_2_12',
     '//external:jar/com/cibo/evilplot_2_12',
+    '//external:jar/com/google/code/findbugs/jsr305',
+    '//external:jar/com/google/flogger/flogger',
     '//external:jar/io/circe/circe_core_2_12',
     '//external:jar/io/circe/circe_generic_2_12',
     '//external:jar/io/circe/circe_generic_extras_2_12',
@@ -34,11 +36,15 @@ scala_library(
   ],
   srcs = [
     'src/main/scala/com/stripe/rainier/example/FitSparse.scala',
+    'src/main/scala/com/stripe/rainier/example/LookupNormal.scala',
     'src/main/scala/com/stripe/rainier/example/DLM.scala',
     'src/main/scala/com/stripe/rainier/example/FitHLL.scala',
     'src/main/scala/com/stripe/rainier/example/Anova.scala',
     'src/main/scala/com/stripe/rainier/example/Funnel.scala',
     'src/main/scala/com/stripe/rainier/example/FitNormal.scala',
+    'src/main/scala/com/stripe/rainier/example/stan/EightSchools.scala',
+    'src/main/scala/com/stripe/rainier/example/stan/ARK.scala',
+    'src/main/scala/com/stripe/rainier/example/stan/LowDimGaussMix.scala',
     'src/main/scala/com/stripe/rainier/example/BatchNormal.scala',
     'src/main/scala/com/stripe/rainier/example/SBCNormal.scala',
     'src/main/scala/com/stripe/rainier/example/LogReg.scala',

diff --git a/rainier-plot/BUILD b/rainier-plot/BUILD
@@ -10,6 +10,8 @@ scala_library(
   deps = [
     '//external:jar/com/chuusai/shapeless_2_12',
     '//external:jar/com/cibo/evilplot_2_12',
+    '//external:jar/com/google/code/findbugs/jsr305',
+    '//external:jar/com/google/flogger/flogger',
     '//external:jar/io/circe/circe_core_2_12',
     '//external:jar/io/circe/circe_generic_2_12',
     '//external:jar/io/circe/circe_generic_extras_2_12',

diff --git a/rainier-scalacheck/BUILD b/rainier-scalacheck/BUILD
@@ -8,6 +8,8 @@ load(
 scala_library(
   name = 'rainierScalacheck',
   deps = [
+    '//external:jar/com/google/code/findbugs/jsr305',
+    '//external:jar/com/google/flogger/flogger',
     '//external:jar/org/scala/lang/scala_reflect',
     '//external:jar/org/scala/sbt/test_interface',
     '//external:jar/org/scalacheck/scalacheck_2_12',

diff --git a/rainier-tests/BUILD b/rainier-tests/BUILD
@@ -8,6 +8,8 @@ load(
 scala_library(
   name = 'rainierTests',
   deps = [
+    '//external:jar/com/google/code/findbugs/jsr305',
+    '//external:jar/com/google/flogger/flogger',
     '//external:jar/org/scala/lang/modules/scala_xml_2_12',
     '//external:jar/org/scala/lang/scala_reflect',
     '//external:jar/org/scala/sbt/test_interface',
@@ -34,5 +36,7 @@ scala_library(
   visibility = [
     '//visibility:public',
   ],
-  srcs = []
+  srcs = [
+    'src/main/scala/com/stripe/rainier/core/SBCModel.scala',
+  ]
 )