biom2krona

Perl libraries

Getopt::Long File::Basename XML::Writer Data::Dumper Math::Round Cwd 'abs_path'

Usage

Create one HTML file with one Krona per sample from biom TSV OTU table.

biom2krona.pl -i otu_table.tsv -o krona.html

Help

### biom2krona.pl 1.0 ###
#
# AUTHOR:		Sebastien THEIL
# VERSION:		1.0
# LAST MODIF:		2017-09-13
# PURPOSE:		This script is used to parse csv file containing tax_id field and creates Krona charts.
#

USAGE: perl biom2krona.pl -i blast_csv_extended_1 -i blast_csv_extended_2 ... -i blast_csv_extended_n [OPTIONS]

	### OPTIONS ###
	-i|input	<BLAST CSV>  Blast CSV extended file and CSV group file corresponding to blast (optional)
	-o|output	<DIRECTORY>  Output directory
	-help|h		Print this help and exit