Next try for (mostly) static builds

steineggerlab · Jan 6, 2025 · d17589d · d17589d
1 parent bcefc67
commit d17589d
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Showing 4 changed files with 12 additions and 1,422 deletions.
diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -4,24 +4,29 @@ cmake_minimum_required(VERSION 3.15 FATAL_ERROR)
 cmake_policy(SET CMP0060 OLD)
 cmake_policy(SET CMP0074 NEW)
 project(foldseek C CXX)
-list(PREPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake")
 list(APPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/lib/mmseqs/cmake")
 
 set(ENABLE_PROSTT5 1 CACHE BOOL "Enable ProstT5")
 set(ENABLE_CUDA 0 CACHE BOOL "Enable CUDA")
 set(IGNORE_RUST_VERSION 0 CACHE BOOL "Ignore Rust version check")
 set(FORCE_STATIC_DEPS 0 CACHE BOOL "Force static linking of deps")
 
-if (FORCE_STATIC_DEPS)
-    set(CMAKE_FIND_LIBRARY_SUFFIXES .a CACHE INTERNAL "" FORCE)
+if(FORCE_STATIC_DEPS)
+    if(ENABLE_CUDA)
+        set(CMAKE_FIND_LIBRARY_SUFFIXES .a .so CACHE INTERNAL "" FORCE)
+        set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -static-libgcc -static-libstdc++")
+    else()
+        set(CMAKE_FIND_LIBRARY_SUFFIXES .a CACHE INTERNAL "" FORCE)
+        set(CMAKE_LINK_SEARCH_START_STATIC ON CACHE INTERNAL "" FORCE)
+        set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -static -static-libgcc -static-libstdc++")
+    endif()
     set(BUILD_SHARED_LIBS OFF CACHE INTERNAL "" FORCE)
-    set(CMAKE_LINK_SEARCH_START_STATIC ON CACHE INTERNAL "" FORCE)
-endif ()
+endif()
 
-if (NOT XCODE AND NOT MSVC AND NOT CMAKE_BUILD_TYPE)
+if(NOT XCODE AND NOT MSVC AND NOT CMAKE_BUILD_TYPE)
     set(CMAKE_BUILD_TYPE Release CACHE STRING "Build type" FORCE)
     set_property(CACHE CMAKE_BUILD_TYPE PROPERTY STRINGS "Debug" "Release" "MinSizeRel" "RelWithDebInfo")
-endif ()
+endif()
 
 set(FRAMEWORK_ONLY 1 CACHE INTERNAL "" FORCE)
 include(MMseqsSetupDerivedTarget)

diff --git a/Dockerfile b/Dockerfile
@@ -43,7 +43,6 @@ RUN if [ "$TARGETARCH" = "arm64" ]; then \
         cd /opt/build/build_avx2; \
         LIBGOMP=/usr/lib/gcc/x86_64-linux-gnu/12/; \
         cmake -GNinja -DHAVE_AVX2=1 -DHAVE_MPI=0 -DHAVE_TESTS=0 -DFORCE_STATIC_DEPS=1 \
-          -DCMAKE_EXE_LINKER_FLAGS="-static-libgcc -static-libstdc++" \
           -DENABLE_CUDA=1 -DCMAKE_CUDA_ARCHITECTURES="75-real;80-real;86-real;89-real;90" \
           -DOpenMP_C_FLAGS="-fopenmp -I${LIBGOMP}" -DOpenMP_C_LIB_NAMES=gomp -DOpenMP_CXX_FLAGS="-fopenmp -I${LIBGOMP}" -DOpenMP_CXX_LIB_NAMES=gomp -DOpenMP_gomp_LIBRARY=${LIBGOMP}/libgomp.a \
           -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=. ..; \

diff --git a/azure-pipelines.yml b/azure-pipelines.yml
@@ -58,7 +58,6 @@ jobs:
           if [ "${STATIC}" -eq "1" ]; then
             LIBGOMP=/usr/lib/gcc/x86_64-linux-gnu/11
             cmake -DCMAKE_BUILD_TYPE=${BUILD_TYPE} -DFORCE_STATIC_DEPS=1 \
-              -DCMAKE_EXE_LINKER_FLAGS="-static -static-libgcc -static-libstdc++" \
               -DOpenMP_C_FLAGS="-fopenmp -I${LIBGOMP}" -DOpenMP_C_LIB_NAMES=gomp -DOpenMP_CXX_FLAGS="-fopenmp -I${LIBGOMP}" -DOpenMP_CXX_LIB_NAMES=gomp -DOpenMP_gomp_LIBRARY=${LIBGOMP}/libgomp.a \
               -DENABLE_WERROR=1 -DHAVE_${SIMD}=1 -DHAVE_MPI=${MPI} ..
           else
@@ -106,7 +105,6 @@ jobs:
           LIBGOMP=/usr/lib/gcc/x86_64-linux-gnu/10;
           /usr/local/bin/cmake -GNinja -DCMAKE_BUILD_TYPE=Release -DHAVE_TESTS=1 -DENABLE_WERROR=1 -DHAVE_AVX2=1 \
             -DFORCE_STATIC_DEPS=1 -DCMAKE_LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/10 -DBUILD_SHARED_LIBS=OFF \
-            -DCMAKE_EXE_LINKER_FLAGS="-static-libgcc -static-libstdc++" \
             -DOpenMP_C_FLAGS="-fopenmp -I${LIBGOMP}" -DOpenMP_C_LIB_NAMES=gomp -DOpenMP_CXX_FLAGS="-fopenmp -I${LIBGOMP}" -DOpenMP_CXX_LIB_NAMES=gomp -DOpenMP_gomp_LIBRARY=${LIBGOMP}/libgomp.a \
             -DENABLE_CUDA=1 -DCMAKE_CUDA_ARCHITECTURES="75-real;80-real;86-real;89-real;90" ..
           cmake --build . -j$(nproc --all)
@@ -156,7 +154,6 @@ jobs:
           LIBGOMP=/usr/lib/gcc-cross/aarch64-linux-gnu/9
           CC=${CPREF}-linux-gnu-gcc CXX=${CPREF}-linux-gnu-g++ \
            cmake -DCMAKE_BUILD_TYPE=${BUILD_TYPE} -DHAVE_TESTS=1 -DFORCE_STATIC_DEPS=1 \
-            -DCMAKE_EXE_LINKER_FLAGS="-static -static-libgcc -static-libstdc++" \
             -DRust_CARGO_TARGET=${CPREF}-unknown-linux-gnu \
             -DOpenMP_C_FLAGS="-fopenmp -I${LIBGOMP}" -DOpenMP_C_LIB_NAMES=gomp -DOpenMP_CXX_FLAGS="-fopenmp -I${LIBGOMP}" -DOpenMP_CXX_LIB_NAMES=gomp -DOpenMP_gomp_LIBRARY=${LIBGOMP}/libgomp.a \
             -DENABLE_WERROR=1 -DHAVE_${SIMD}=1 ..