pass correct parameter list to mergeresultsbyset

steineggerlab · Apr 2, 2024 · a2f62ee · a2f62ee
1 parent f74d1b5
commit a2f62ee
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/data/structuresearch.sh b/data/structuresearch.sh
@@ -65,7 +65,7 @@ if [ "$ALIGNMENT_ALGO" = "tmalign" ]; then
     if [ -n "${EXPAND}" ]; then
         if notExists "${TMP_PATH}/strualn_expanded.dbtype"; then
             # shellcheck disable=SC2086
-            "$MMSEQS" mergeresultsbyset  "${INTERMEDIATE}" "${TARGET_ALIGNMENT}_clu" "${TMP_PATH}/strualn_expanded" ${MERGERESULTBYSET_PAR} \
+            "$MMSEQS" mergeresultsbyset "${INTERMEDIATE}" "${TARGET_ALIGNMENT}_clu" "${TMP_PATH}/strualn_expanded" ${MERGERESULTBYSET_PAR} \
                 || fail "Expand died"
         fi
         INTERMEDIATE="${TMP_PATH}/strualn_expanded"

diff --git a/src/workflow/StructureSearch.cpp b/src/workflow/StructureSearch.cpp
@@ -216,7 +216,7 @@ int structuresearch(int argc, const char **argv, const Command &command) {
                     EXIT(EXIT_FAILURE);
                 }
             }
-            cmd.addVariable("MERGERESULTBYSET_PAR", par.createParameterString(par.threadsandcompression).c_str());
+            cmd.addVariable("MERGERESULTBYSET_PAR", par.createParameterString(par.mergeresultsbyset).c_str());
             cmd.addVariable("EXPAND", "1");
         }
         std::string program = tmpDir + "/structuresearch.sh";