Hardcode openmp paths in CI

steineggerlab · Jan 5, 2025 · 75fa82d · 75fa82d
1 parent 16b7f46
commit 75fa82d
Showing 1 changed file with 9 additions and 5 deletions.
diff --git a/azure-pipelines.yml b/azure-pipelines.yml
@@ -56,12 +56,14 @@ jobs:
           mkdir build && cd build
           export CC=gcc-11 ; export CXX=g++-11
           if [ "${STATIC}" -eq "1" ]; then
-              cmake -DCMAKE_BUILD_TYPE=${BUILD_TYPE} -DFORCE_STATIC_DEPS=1 \
-                -DCMAKE_EXE_LINKER_FLAGS="-static -static-libgcc -static-libstdc++" \
-                -DENABLE_WERROR=1 -DHAVE_${SIMD}=1 -DHAVE_MPI=${MPI} ..
+            LIBGOMP=/usr/lib/gcc/x86_64-linux-gnu/11
+            cmake -DCMAKE_BUILD_TYPE=${BUILD_TYPE} -DFORCE_STATIC_DEPS=1 \
+              -DCMAKE_EXE_LINKER_FLAGS="-static -static-libgcc -static-libstdc++" \
+              -DOpenMP_C_FLAGS="-fopenmp -I${LIBGOMP}" -DOpenMP_C_LIB_NAMES=gomp -DOpenMP_CXX_FLAGS="-fopenmp -I${LIBGOMP}" -DOpenMP_CXX_LIB_NAMES=gomp -DOpenMP_gomp_LIBRARY=${LIBGOMP}/libomp.a \
+              -DENABLE_WERROR=1 -DHAVE_${SIMD}=1 -DHAVE_MPI=${MPI} ..
           else
-              cmake -DHAVE_SANITIZER=1 -DCMAKE_BUILD_TYPE=${BUILD_TYPE} \
-                -DENABLE_WERROR=1 -DHAVE_${SIMD}=1 -DHAVE_MPI=${MPI} ..
+            cmake -DHAVE_SANITIZER=1 -DCMAKE_BUILD_TYPE=${BUILD_TYPE} \
+              -DENABLE_WERROR=1 -DHAVE_${SIMD}=1 -DHAVE_MPI=${MPI} ..
           fi
 
           make -j $(nproc --all) VERBOSE=1
@@ -109,10 +111,12 @@ jobs:
         displayName: Install Toolchain
       - script: |
           mkdir build && cd build
+          LIBGOMP=/usr/lib/gcc-cross/aarch64-linux-gnu/9
           CC=${CPREF}-linux-gnu-gcc CXX=${CPREF}-linux-gnu-g++ \
            cmake -DCMAKE_BUILD_TYPE=${BUILD_TYPE} -DHAVE_TESTS=1 -DFORCE_STATIC_DEPS=1 \
             -DCMAKE_EXE_LINKER_FLAGS="-static -static-libgcc -static-libstdc++" \
             -DRust_CARGO_TARGET=${CPREF}-unknown-linux-gnu \
+            -DOpenMP_C_FLAGS="-fopenmp -I${LIBGOMP}" -DOpenMP_C_LIB_NAMES=gomp -DOpenMP_CXX_FLAGS="-fopenmp -I${LIBGOMP}" -DOpenMP_CXX_LIB_NAMES=gomp -DOpenMP_gomp_LIBRARY=${LIBGOMP}/libomp.a \
             -DENABLE_WERROR=1 -DHAVE_${SIMD}=1 ..
           make -j $(nproc --all)
         displayName: Build foldseek