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@statbiophys

Statistical Biophysics Consortium

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  1. OLGA OLGA Public

    Compute generation probabilities of CDR3 amino acid and nucleotide sequences

    Python 49 17

  2. SONIA SONIA Public

    Infer selection pressures on features of amino acid CDR3 sequences.

    Python 23 7

  3. HLAGuessr HLAGuessr Public

    Jupyter Notebook 16 2

  4. soNNia soNNia Public

    Python 13 4

  5. pygor3 pygor3 Public

    pygor3 repository

    Jupyter Notebook 9 4

  6. NoisET NoisET Public

    NoisET is an easy-to-use python package that implements and generalizes a previously developed Bayesian method in [Puelma Touzel et al, 2020] ). It can be used to learn experimental noise models fo…

    Jupyter Notebook 8 2

Repositories

Showing 10 of 36 repositories
  • HILARy Public

    Python package for inference of lineages in antibody repertoires

    statbiophys/HILARy’s past year of commit activity
    Jupyter Notebook 5 GPL-3.0 3 0 1 Updated Dec 10, 2024
  • soNNia Public
    statbiophys/soNNia’s past year of commit activity
    Python 13 GPL-3.0 4 3 0 Updated Dec 10, 2024
  • ABGen Public

    Code for the Paper: Generative Model for Monoclonal Antibodies

    statbiophys/ABGen’s past year of commit activity
    Python 2 0 0 0 Updated Nov 25, 2024
  • social_mice Public

    Python and MATLAB code and data for statistical physics analysis of social behavior in Eco-HAB mice.

    statbiophys/social_mice’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Nov 22, 2024
  • HLAGuessr Public
    statbiophys/HLAGuessr’s past year of commit activity
    Jupyter Notebook 16 GPL-3.0 2 1 0 Updated Oct 8, 2024
  • ATrieGC Public

    A python/c++ module to store large amount of sequences and look at hamming distance clustering

    statbiophys/ATrieGC’s past year of commit activity
    C++ 1 GPL-3.0 1 0 0 Updated Sep 7, 2024
  • pygor3 Public

    pygor3 repository

    statbiophys/pygor3’s past year of commit activity
    Jupyter Notebook 9 4 5 3 Updated Jul 14, 2024
  • SONIA Public

    Infer selection pressures on features of amino acid CDR3 sequences.

    statbiophys/SONIA’s past year of commit activity
    Python 23 GPL-3.0 7 1 1 Updated Apr 17, 2024
  • tools Public

    Repository where useful tools can be reused by others in the group

    statbiophys/tools’s past year of commit activity
    0 0 0 0 Updated Apr 8, 2024
  • catede Public Forked from camacesco/catede

    Tools for information theoretic measures estimation.

    statbiophys/catede’s past year of commit activity
    Python 2 1 0 0 Updated Feb 13, 2024
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