[5.x] Run query scopes after all other query methods so the query can be changed

[ryanmitchell]

This PR updates the collection tag to query scopes after orderBys, which allows the scope to modify the default orderBy set.

For example, in the linked issue, inside the scope you could:

public function apply($query, $values)
{
    $query->reorder('my_column', 'desc');
}

Requires: #10871
Closes #10230