Code

Update master to Release/v2.35.0#3292

Code

Merged

serban-nicusor-toptal merged 118 commits intomasterstan-dev/stan:masterfrom release/v2.35.0stan-dev/stan:release/v2.35.0Copy head branch name to clipboardJun 5, 2024

+3,193-3,020

Commits

Commits on Jan 25, 2024

• Updates the Math submodule to c26bd8387d.

  stan-buildbot

  committed
  90a704a

• Add option to output hessian, disable LP calcs in Laplace

  WardBrian

  committed
  3b72f01

• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

  stan-buildbot

  committed
  32032d8

Commits on Jan 26, 2024

• Properly allow multiple downstream jenkins runs

  WardBrian

  authored
  68df3c6

Commits on Jan 28, 2024

• Updates the Math submodule to 9b6bc3d3fd.

  stan-buildbot

  committed
  d402c36

• Merge pull request #3262 from stan-dev/ci/jenkins-downstream-concurrent

  Show description for 29c60f7
  WardBrian

  authored
  29c60f7

Commits on Jan 30, 2024

• Updates the Math submodule to 4b40ec51a5.

  stan-buildbot

  committed
  bb4ab32

• newrhat

  aleksgorica

  committed
  88173cc

• Start: use type alias rng_t consistently

  WardBrian

  committed
  60882b8

• Update first round of tests

  WardBrian

  committed
  467762d

• Update remaining tests to use rng_t

  WardBrian

  committed
  a92cdb1

• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

  stan-buildbot

  committed
  ebe8da2

• Make mcmc::chains a template again to fix compilation

  WardBrian

  committed
  bf1d10b

• Revert any seed-dependent changed tests

  WardBrian

  committed
  35444e1

• Merge pull request #3261 from stan-dev/feature/3215-3260-laplace-additions

  Show description for a49908b
  WardBrian

  authored
  a49908b

Commits on Jan 31, 2024

• resolved some of pr1

  aleksgorica

  committed
  98450d7

• Merge pull request #3263 from stan-dev/refactor/switch-rngs

  Show description for 476a356
  WardBrian

  authored
  476a356

• comments deleted

  aleksgorica

  committed
  b09f512

Commits on Feb 1, 2024

• Updates the Math submodule to babb1adabd.

  stan-buildbot

  committed
  322d2ed

• Test changed

  aleksgorica

  committed
  dcd21f2

Commits on Feb 2, 2024

• Updates the Math submodule to 967e86d08a.

  stan-buildbot

  committed
  57fb925

Commits on Feb 3, 2024

• Updates the Math submodule to 8e4e4e6ffc.

  stan-buildbot

  committed
  a015434

Commits on Feb 4, 2024

• chains_test modified

  aleksgorica

  committed
  c20ce61

Commits on Feb 6, 2024

• Merge commit 'a0154340ce1f195de01839075adad25e10bf28d5' into HEAD

  yashikno

  committed
  0e8379f

• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

  stan-buildbot

  committed
  5630c51

Commits on Feb 7, 2024

• Remove unused includes of dump.hpp

  WardBrian

  committed
  924e062

• Remove usages of dump from tests

  WardBrian

  committed
  f4d91fc

• Clean up ADVI tests

  WardBrian

  committed
  dc8179d

• Rewrite create_inv_metric helpers to avoid using io::dump

  WardBrian

  committed
  ba49cb0

• Remove from most remaining tests

  WardBrian

  committed
  cc2e030

• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

  stan-buildbot

  committed
  d2504e8

Commits on Feb 8, 2024

• Updates the Math submodule to c6254fbd45.

  stan-buildbot

  committed
  9f98bdf

• Better names than 'dmp'

  WardBrian

  committed
  fa56400

• Merge commit '9f98bdfc89667f6c3b4500fa1ce3d6b0c02a60ff' into HEAD

  yashikno

  committed
  ef1da99

• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

  stan-buildbot

  committed
  e4c466c

• Merge pull request #3267 from stan-dev/cleanup/rdump-deprecation

  Show description for b6d010f
  WardBrian

  authored
  b6d010f

• Only swallow domain_errors

  WardBrian

  committed
  643fd8b

• A few more places

  WardBrian

  committed
  5681a81

• Maintain exception safety in top-level services functions

  WardBrian

  committed
  2709df7

• Fix pathfinder return

  WardBrian

  committed
  759a569

Commits on Feb 11, 2024

• Eigen::Index; index without calculating rows, cols; removed online way of calculating variance and averages

  aleksgorica

  committed
  50617bd

• Merge commit 'b6d010fa1dab84d8910b382636c8707c4104fd2e' into HEAD

  yashikno

  committed
  7c5880f

• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

  stan-buildbot

  committed
  dc130f8

Commits on Feb 13, 2024

• Move try/catch outside optimization loop

  WardBrian

  committed
  24ef95f

• cpplint fix

  WardBrian

  committed
  c95036b

• Merge pull request #3259 from stan-dev/fix/3258-unconditional-exception-swallowing

  Show description for 6697a24
  WardBrian

  authored
  6697a24

• Change RNG to boost::mixmax

  WardBrian

  committed
  223497a

• Update seed/rng-dependent tests

  WardBrian

  committed
  3b75dc0

Commits on Feb 14, 2024

• Merge pull request #3264 from stan-dev/refactor/actually-switch-rngs

  Show description for c22f26a
  WardBrian

  authored
  c22f26a

Commits on Feb 17, 2024

• Updates the Math submodule to 8558ce891a.

  stan-buildbot

  committed
  b13d08d

Commits on Feb 19, 2024

• Updates the Math submodule to c12fff9f53.

  stan-buildbot

  committed
  41fd137

Commits on Feb 26, 2024

• duplicated functions and test for rank version of compute_potential_scale_reduction

  aleksgorica

  committed
  3433d9c

• Merge branch 'newrhat' of https://github.com/aleksgorica/stan into newrhat

  aleksgorica

  committed
  4b58653

• Merge commit '41fd137d7cf89db794210142d6c61f07cf9f0b0a' into HEAD

  yashikno

  committed
  3aeab3f

• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

  stan-buildbot

  committed
  30333ce

• test chains_test changed

  aleksgorica

  committed
  77d875f

• Merge branch 'newrhat' of https://github.com/aleksgorica/stan into newrhat

  aleksgorica

  committed
  6221540

• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

  stan-buildbot

  committed
  da10f8f

Commits on Feb 27, 2024

• Removed deprecated flags in perReport plugin

  

  Nicusor Serban

  committed
  d0d88d5

• Fix recordIssues syntax

  serban-nicusor-toptal

  committed
  348716b

Commits on Feb 28, 2024

• added test values from arviz

  aleksgorica

  committed
  c3b1101

• Merge branch 'newrhat' of https://github.com/aleksgorica/stan into newrhat

  aleksgorica

  committed
  263ac22

• Merge commit '348716b22e624b98000a6ee4a4389603da861493' into HEAD

  yashikno

  committed
  b6ef4bb

• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

  stan-buildbot

  committed
  51ad447

Commits on Mar 16, 2024

• Move post success step to linux node for os deps

  

  Nicusor Serban

  committed
  2caacdb

Commits on Mar 18, 2024

• Revert earlier Jenkinsfile changes

  serban-nicusor-toptal

  committed
  90c7433

Commits on Mar 20, 2024

• Clean up various doxygen or compiler warnings

  WardBrian

  committed
  cbb289e

Commits on Mar 21, 2024

• Merge pull request #3276 from stan-dev/cleanup/compile-warnings

  WardBrian

  authored
  9f5525b

• Updates the Math submodule to 33b9a828bb.

  stan-buildbot

  committed
  ea57252

Commits on Mar 22, 2024

• Updates the Math submodule to e8ab249582.

  stan-buildbot

  committed
  5b73f27

Commits on Mar 24, 2024

• Updates the Math submodule to b010193521.

  stan-buildbot

  committed
  951ce92

Commits on Mar 25, 2024

• smaller changes for comments in pull request

  aleksgorica

  committed
  71bfbcf

• Merge commit '951ce92cee114881c9baa556bb63cebffb9f7772' into HEAD

  yashikno

  committed
  c371c21

• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

  stan-buildbot

  committed
  385c80b

Commits on Mar 27, 2024

• returning pair for rank rhat

  aleksgorica

  committed
  51a2504

• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

  stan-buildbot

  committed
  ba2b6f5

Commits on Mar 28, 2024

• Updates the Math submodule to 35d6d53545.

  stan-buildbot

  committed
  77727a9

Commits on Apr 2, 2024

• Updates the Math submodule to 1f94ed3123.

  stan-buildbot

  committed
  73d9b01

Commits on Apr 7, 2024

• small fixes, removed comments in tests

  aleksgorica

  committed
  981eedc

• Merge commit '73d9b01d2851d6dd98f1e43dcb56735c20da6cef' into HEAD

  yashikno

  committed
  de941ba

• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

  stan-buildbot

  committed
  971aed7

Commits on Apr 12, 2024

• Pathfinder: stop returning more draws than requested

  WardBrian

  committed
  7a4743d

• Merge commit '73d9b01d2851d6dd98f1e43dcb56735c20da6cef' into HEAD

  yashikno

  committed
  09feffe

• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

  stan-buildbot

  committed
  a133e1d

• Round Pareto-K value

  WardBrian

  committed
  eb2dffc

Commits on Apr 13, 2024

• Updates the Math submodule to b9d0a33291.

  stan-buildbot

  committed
  ed65c9e

Commits on Apr 15, 2024

• Merge pull request #3279 from stan-dev/fix/3268-pathfinder-too-many-draws

  Show description for c582de8
  SteveBronder

  authored
  c582de8

Commits on Apr 17, 2024

• reverting nonrank functions

  aleksgorica

  committed
  61c4c6c

• Merge commit 'c582de8f5a59e721df0c2786830a8c8b921e2961' into HEAD

  yashikno

  committed
  9dae7a0

• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

  stan-buildbot

  committed
  51db135

Commits on Apr 19, 2024

• Updates the Math submodule to 11663a2e79.

  stan-buildbot

  committed
  634034d

• update so scale_reduction calls scale_reduction_rank

  SteveBronder

  committed
  f12f259

• Merge commit '634034deb3abd6314d980c1aab083f64269f4019' into HEAD

  yashikno

  committed
  3cb8e97

• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

  stan-buildbot

  committed
  da5bb8d

Commits on Apr 20, 2024

• Updates the Math submodule to 86a3e83e18.

  stan-buildbot

  committed
  58ab01b

Commits on Apr 21, 2024

• Update tests to use rtools-provided make

  andrjohns

  committed
  eb39304

• Fix null usage on windows

  andrjohns

  committed
  c224139

Commits on Apr 22, 2024

• Revert "update so scale_reduction calls scale_reduction_rank"

  Show description for b3631be
  SteveBronder

  committed
  b3631be

Commits on Apr 23, 2024

• Merge pull request #3266 from aleksgorica/newrhat

  Show description for f93a559
  aleksgorica

  authored
  f93a559

Commits on May 3, 2024

• Updates the Math submodule to 9202f1f505.

  stan-buildbot

  committed
  04708f4

Commits on May 6, 2024

• Merge pull request #3281 from stan-dev/migrate-rtools-make

  Show description for 06fbe08
  WardBrian

  authored
  06fbe08

• Fix doxygen param names in compute_potential_scale_reduction.hpp

  WardBrian

  committed
  8dad308

• Merge pull request #3282 from stan-dev/fix/compute_psr_doxygen

  WardBrian

  authored
  d59e6e0

Commits on May 7, 2024

• Updates the Math submodule to ee65daae95.

  stan-buildbot

  committed
  67dd17e

Commits on May 9, 2024

• Updates the Math submodule to 1830097a0d.

  stan-buildbot

  committed
  7ffb934

Commits on May 11, 2024

• Updates the Math submodule to 35d37cebb0.

  stan-buildbot

  committed
  607474b

Commits on May 12, 2024

• Updates the Math submodule to 53ff81d128.

  stan-buildbot

  committed
  bef9c85

Commits on May 13, 2024

• updating version numbers for 2.35.0 rc (#3284)

  serban-nicusor-toptal

  authored
  1bbf735

Commits on May 14, 2024

• Updates the Math submodule to 887a2e7ac5.

  stan-buildbot

  committed
  3e18293

Commits on May 17, 2024

• Updates the Math submodule to 814d915905.

  stan-buildbot

  committed
  8cbd2f2

• Ensure mixmax rng is not initialized with all zeros

  WardBrian

  committed
  ef3b05b

Commits on May 21, 2024

• Updates the Math submodule to b12cfbdeb0.

  stan-buildbot

  committed
  8fbfd79

Commits on May 22, 2024

• Updates the Math submodule to 8e76f01fa0.

  stan-buildbot

  committed
  62b2a19

• Merge pull request #3287 from stan-dev/fix/rng-init

  Show description for 356d206
  WardBrian

  authored
  356d206

Commits on May 23, 2024

• Updates the Math submodule to ce63b87b13.

  stan-buildbot

  committed
  c746ad2

Commits on May 24, 2024

• Updates the Math submodule to e1fcbe8dca.

  stan-buildbot

  committed
  3cf3d9e

Commits on Jun 3, 2024

• Updates the Math submodule to 8a09048f51.

  stan-buildbot

  committed
  2e394bb

• Add release notes for v2.35.0

  

  Nicusor Serban

  committed
  d94c86f