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Release/v2.34.0#3254

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serban-nicusor-toptal wants to merge 125 commits intomasterstan-dev/stan:masterfrom release/v2.34.0stan-dev/stan:release/v2.34.0Copy head branch name to clipboard

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Commits on Jul 19, 2023

• Merge branch 'develop' of https://github.com/stan-dev/stan into develop

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Commits on Aug 10, 2023

• update opencl assign test after recover_memory() to reinstantiate the size 0 matrix of vars

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• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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Commits on Sep 1, 2023

• Merge branch 'develop' of https://github.com/stan-dev/stan into develop

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Commits on Sep 5, 2023

• Updates the Math submodule to 245ba7b.

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• release/v2.33.0: updating version numbers (#3221)

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• Make json_writer a structured_writer, improve output formatting

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• Ignore cpplint warning

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• Make destructor virtual

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• Changes per review

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Commits on Sep 6, 2023

• Updates the Math submodule to 5091bf9.

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• Merge pull request #3227 from stan-dev/feature/json-prettify

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Commits on Sep 7, 2023

• Resolve various warnings due to doxygen, keywords

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• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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Commits on Sep 8, 2023

• checkpointing

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• Fix virtual signature in structured_writer

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• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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• Update src/stan/callbacks/json_writer.hpp

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• Merge pull request #3228 from stan-dev/fix/warnings

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• checkpointing

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• checkpointing - metric file written via 1 unit test

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Commits on Sep 11, 2023

• checkpointing

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• checkpointing, unit tests for dense and diagonal passing

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Commits on Sep 12, 2023

• checkpointing

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Commits on Sep 13, 2023

• checkpointing - all unit tests passing

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• Merge commit 'c5a75e77d36f70aaeb567c97be6c9b2e8f2a51e2' into HEAD

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• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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• Merge branch 'feature/3181-json-hmc-tuning-params' of https://github.com/stan-dev/stan into feature/3181-json-hmc-tuning-params

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Commits on Sep 14, 2023

• Merge Release/v2.33.0 into develop (#3231)

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Commits on Sep 15, 2023

• structured writer - compiler error

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• Merge commit '2df2382a07310ca57b5e5d12d4921f9eff69d66a' into HEAD

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• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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Commits on Sep 16, 2023

• Merge branch 'feature/3181-json-hmc-tuning-params' of https://github.com/stan-dev/stan into feature/3181-json-hmc-tuning-params

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• unit tests passing

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• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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• Merge branch 'feature/3181-json-hmc-tuning-params' of https://github.com/stan-dev/stan into feature/3181-json-hmc-tuning-params

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• lint fix

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Commits on Sep 17, 2023

• clean up doc comments

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• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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• Merge branch 'feature/3181-json-hmc-tuning-params' of https://github.com/stan-dev/stan into feature/3181-json-hmc-tuning-params

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• code cleanup

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Commits on Sep 19, 2023

• Updates the Math submodule to c001c71.

  stan-buildbot

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• remove metric_writer from util/mcmc_writer

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• changes per code review

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• Merge commit '98a6b5592e0268c8cbed914050ef93e55b55d517' into HEAD

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• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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• Merge branch 'feature/3181-json-hmc-tuning-params' of https://github.com/stan-dev/stan into feature/3181-json-hmc-tuning-params

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• Merge branch 'feature/3181-json-hmc-tuning-params' of https://github.com/stan-dev/stan into feature/3181-json-hmc-tuning-params

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• code cleanup

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• Merge branch 'feature/3181-json-hmc-tuning-params' of https://github.com/stan-dev/stan into feature/3181-json-hmc-tuning-params

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• remove unneeded signatures for multi-chain hmc_nuts

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Commits on Sep 20, 2023

• Merge branch 'feature/3181-json-hmc-tuning-params' of https://github.com/stan-dev/stan into feature/3181-json-hmc-tuning-params

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• Revert "remove unneeded signatures for multi-chain hmc_nuts"

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• Merge branch 'feature/3181-json-hmc-tuning-params' of https://github.com/stan-dev/stan into feature/3181-json-hmc-tuning-params

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Commits on Sep 21, 2023

• Merge pull request #3230 from stan-dev/feature/3181-json-hmc-tuning-params

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• Merge branch 'develop' of https://github.com/stan-dev/stan into develop

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• Use stan::test::is_valid_JSON consistently

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• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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Commits on Sep 22, 2023

• Merge pull request #3232 from stan-dev/test/use-json-test-util

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Commits on Oct 1, 2023

• Updates the Math submodule to 617ae34.

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Commits on Oct 5, 2023

• Updates the Math submodule to e5879f6.

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Commits on Oct 6, 2023

• Updates the Math submodule to c90b3bf.

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Commits on Oct 9, 2023

• Updates the Math submodule to 2d7fbe2.

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Commits on Oct 12, 2023

• Updates the Math submodule to 7a039be.

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Commits on Oct 18, 2023

• Merge pull request #3219 from stan-dev/fix/opencl-assign-test

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Commits on Oct 25, 2023

• Updates the Math submodule to 5384ea7.

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• Remove unused deprecated boost header include

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Commits on Oct 26, 2023

• Merge pull request #3234 from stan-dev/fix/deprecated-boost-header

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Commits on Oct 27, 2023

• jenkins: cleanup old build logs

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Commits on Oct 28, 2023

• Updates the Math submodule to 8062e06.

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Commits on Nov 1, 2023

• Log optimization errors on error channel

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• Merge pull request #3236 from stan-dev/jenkins-cleanlogs

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Commits on Nov 3, 2023

• Switch to using non-concurrent vector with fixed indicies for multi-pathfinder

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• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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Commits on Nov 6, 2023

• Merge pull request #3238 from stan-dev/fix/optimize-log-error

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• Merge pull request #3239 from stan-dev/fix/3237-pathfinder-concurrent-vector

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Commits on Nov 8, 2023

• Updates the Math submodule to 35ac18893b.

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Commits on Nov 9, 2023

• Replace usage of killOldBuilds with disableConcurrentBuilds (#3240)

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Commits on Nov 10, 2023

• Updates the Math submodule to e43fc08ca3.

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Commits on Nov 16, 2023

• update psis to not add back the max and return the unnormalized resampling ratios

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Commits on Nov 20, 2023

• fix test

  SteveBronder

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Commits on Dec 5, 2023

• Updates the Math submodule to 754e94e31d.

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• rhat return early with no draws

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Commits on Dec 7, 2023

• Updates the Math submodule to ffeedb5b5d.

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• Merge branch 'develop' of https://github.com/stan-dev/stan into develop

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• report metric type based on point type

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• metric types match cmdstan args

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Commits on Dec 8, 2023

• Merge pull request #3243 from stan-dev/fix/psis-weights-overflow

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• Merge commit '4637f9494db2d48d6dfd573505fe9053d0b4be5c' into HEAD

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• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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Commits on Dec 9, 2023

• changes per code review

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Commits on Dec 11, 2023

• Merge pull request #3248 from stan-dev/feature/3247-json-metric-type

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Commits on Dec 12, 2023

• Updates the Math submodule to c491e9b591.

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Commits on Dec 17, 2023

• Updates the Math submodule to 56cc81779d.

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Commits on Dec 19, 2023

• Updates the Math submodule to 013bb8bd12.

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Commits on Dec 23, 2023

• Updates the Math submodule to ae90c3edca.

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Commits on Jan 2, 2024

• Adds option to turn off psis resampling and lp calculation for pathfinder

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• cpplint

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Commits on Jan 3, 2024

• Merge pull request #3246 from stan-dev/stansummary-segfault

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• Merge remote-tracking branch 'origin/develop' into feature/no-psis-or-lp-calc-pathfinder

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• update with review

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Commits on Jan 4, 2024

• fix typo in vals vs values for unique_stream_writer

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• add virtual overloads for vector and row vector printing for unique_stream_writer

  SteveBronder

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Commits on Jan 5, 2024

• Updates the Math submodule to 895f3e986d.

  stan-buildbot

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• Remove array from writer overloads and have pathfinder only write with matrices

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• Merge commit '7e9342f13e9b71e5aac2040a90c59aa56fd12842' into HEAD

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• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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• add signatures for blocks

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• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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• names for writer block arguments

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• use Ref instead of multiple overloads for writer

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• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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• Remove logic for row vector

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• Remove logic for row vector

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• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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• Use {} instead of () for CommaFormat defaults in unique_stream_writer

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• [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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• remove old test code

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Commits on Jan 6, 2024

• Updates the Math submodule to 0061d8fb2e.

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Commits on Jan 8, 2024

• Merge pull request #3249 from stan-dev/feature/no-psis-or-lp-calc-pathfinder

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Commits on Jan 15, 2024

• release/v2.34.0: updating version numbers

  

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Commits on Jan 16, 2024

• Updating Math Library to tagged v4.8.0

  

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Commits on Jan 17, 2024

• Fixed conflicts

  

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