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stan-dev · Jan 30, 2024 · ebe8da2 · ebe8da2
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Showing 16 changed files with 38 additions and 47 deletions.
diff --git a/src/test/unit/mcmc/hmc/hamiltonians/base_hamiltonian_test.cpp b/src/test/unit/mcmc/hmc/hamiltonians/base_hamiltonian_test.cpp
@@ -14,7 +14,8 @@ TEST(BaseHamiltonian, update_potential_gradient) {
   funnel_model_namespace::funnel_model model(data_var_context, 0,
                                              &model_output);
 
-  stan::mcmc::mock_hamiltonian<funnel_model_namespace::funnel_model, stan::rng_t>
+  stan::mcmc::mock_hamiltonian<funnel_model_namespace::funnel_model,
+                               stan::rng_t>
       metric(model);
   stan::mcmc::ps_point z(11);
   z.q.setOnes();

diff --git a/src/test/unit/mcmc/hmc/hamiltonians/dense_e_metric_test.cpp b/src/test/unit/mcmc/hmc/hamiltonians/dense_e_metric_test.cpp
@@ -60,7 +60,6 @@ TEST(McmcDenseEMetric, sample_p) {
 }
 
 TEST(McmcDenseEMetric, gradients) {
-
   Eigen::VectorXd q = Eigen::VectorXd::Ones(11);
 
   stan::mcmc::dense_e_point z(q.size());
@@ -153,7 +152,6 @@ TEST(McmcDenseEMetric, gradients) {
 TEST(McmcDenseEMetric, streams) {
   stan::test::capture_std_streams();
 
-
   Eigen::VectorXd q(2);
   q(0) = 5;
   q(1) = 1;

diff --git a/src/test/unit/mcmc/hmc/hamiltonians/diag_e_metric_test.cpp b/src/test/unit/mcmc/hmc/hamiltonians/diag_e_metric_test.cpp
@@ -42,7 +42,6 @@ TEST(McmcDiagEMetric, sample_p) {
 }
 
 TEST(McmcDiagEMetric, gradients) {
-
   Eigen::VectorXd q = Eigen::VectorXd::Ones(11);
 
   stan::mcmc::diag_e_point z(q.size());
@@ -134,7 +133,6 @@ TEST(McmcDiagEMetric, gradients) {
 TEST(McmcDiagEMetric, streams) {
   stan::test::capture_std_streams();
 
-
   Eigen::VectorXd q(2);
   q(0) = 5;
   q(1) = 1;

diff --git a/src/test/unit/mcmc/hmc/hamiltonians/softabs_metric_test.cpp b/src/test/unit/mcmc/hmc/hamiltonians/softabs_metric_test.cpp
@@ -57,7 +57,6 @@ TEST(McmcSoftAbs, sample_p) {
 }
 
 TEST(McmcSoftAbs, gradients) {
-
   Eigen::VectorXd q = Eigen::VectorXd::Ones(11);
 
   stan::mcmc::softabs_point z(q.size());

diff --git a/src/test/unit/mcmc/hmc/hamiltonians/unit_e_metric_test.cpp b/src/test/unit/mcmc/hmc/hamiltonians/unit_e_metric_test.cpp
@@ -42,7 +42,6 @@ TEST(McmcUnitEMetric, sample_p) {
 }
 
 TEST(McmcUnitEMetric, gradients) {
-
   Eigen::VectorXd q = Eigen::VectorXd::Ones(11);
 
   stan::mcmc::unit_e_point z(q.size());

diff --git a/src/test/unit/mcmc/hmc/integrators/expl_leapfrog2_test.cpp b/src/test/unit/mcmc/hmc/integrators/expl_leapfrog2_test.cpp
@@ -10,7 +10,6 @@
 #include <stan/services/util/create_rng.hpp>
 
 TEST(McmcHmcIntegratorsExplLeapfrog, energy_conservation) {
-
   stan::io::empty_var_context data_var_context;
 
   std::stringstream model_output;
@@ -58,7 +57,6 @@ TEST(McmcHmcIntegratorsExplLeapfrog, energy_conservation) {
 }
 
 TEST(McmcHmcIntegratorsExplLeapfrog, symplecticness) {
-
   stan::io::empty_var_context data_var_context;
 
   std::stringstream model_output;

diff --git a/src/test/unit/mcmc/hmc/integrators/expl_leapfrog_test.cpp b/src/test/unit/mcmc/hmc/integrators/expl_leapfrog_test.cpp
@@ -15,7 +15,6 @@
 // namespace
 //************************************************************
 
-
 class McmcHmcIntegratorsExplLeapfrogF : public testing::Test {
  public:
   McmcHmcIntegratorsExplLeapfrogF()
@@ -43,12 +42,12 @@ class McmcHmcIntegratorsExplLeapfrogF : public testing::Test {
   stan::callbacks::stream_logger logger;
 
   // integrator under test
-  stan::mcmc::expl_leapfrog<
-      stan::mcmc::unit_e_metric<command_model_namespace::command_model, stan::rng_t> >
+  stan::mcmc::expl_leapfrog<stan::mcmc::unit_e_metric<
+      command_model_namespace::command_model, stan::rng_t> >
       unit_e_integrator;
 
-  stan::mcmc::expl_leapfrog<
-      stan::mcmc::diag_e_metric<command_model_namespace::command_model, stan::rng_t> >
+  stan::mcmc::expl_leapfrog<stan::mcmc::diag_e_metric<
+      command_model_namespace::command_model, stan::rng_t> >
       diag_e_integrator;
 
   // model
@@ -445,8 +444,8 @@ TEST_F(McmcHmcIntegratorsExplLeapfrogF, evolve_9) {
 TEST_F(McmcHmcIntegratorsExplLeapfrogF, streams) {
   stan::test::capture_std_streams();
 
-  typedef stan::mcmc::expl_leapfrog<
-      stan::mcmc::unit_e_metric<command_model_namespace::command_model, stan::rng_t> >
+  typedef stan::mcmc::expl_leapfrog<stan::mcmc::unit_e_metric<
+      command_model_namespace::command_model, stan::rng_t> >
       integrator;
 
   EXPECT_NO_THROW(integrator i);

diff --git a/src/test/unit/mcmc/hmc/integrators/impl_leapfrog2_test.cpp b/src/test/unit/mcmc/hmc/integrators/impl_leapfrog2_test.cpp
@@ -12,7 +12,6 @@
 #include <sstream>
 
 TEST(McmcHmcIntegratorsImplLeapfrog, unit_e_energy_conservation) {
-
   stan::io::empty_var_context data_var_context;
 
   std::stringstream model_output;
@@ -60,7 +59,6 @@ TEST(McmcHmcIntegratorsImplLeapfrog, unit_e_energy_conservation) {
 }
 
 TEST(McmcHmcIntegratorsImplLeapfrog, unit_e_symplecticness) {
-
   stan::io::empty_var_context data_var_context;
 
   std::stringstream model_output;
@@ -146,7 +144,6 @@ TEST(McmcHmcIntegratorsImplLeapfrog, unit_e_symplecticness) {
 }
 
 TEST(McmcHmcIntegratorsImplLeapfrog, softabs_energy_conservation) {
-
   stan::io::empty_var_context data_var_context;
 
   std::stringstream model_output;
@@ -194,7 +191,6 @@ TEST(McmcHmcIntegratorsImplLeapfrog, softabs_energy_conservation) {
 }
 
 TEST(McmcHmcIntegratorsImplLeapfrog, softabs_symplecticness) {
-
   stan::io::empty_var_context data_var_context;
 
   std::stringstream model_output;

diff --git a/src/test/unit/mcmc/hmc/integrators/impl_leapfrog_test.cpp b/src/test/unit/mcmc/hmc/integrators/impl_leapfrog_test.cpp
@@ -9,7 +9,6 @@
 #include <test/test-models/good/mcmc/hmc/integrators/command.hpp>
 #include <test/unit/util.hpp>
 
-
 #include <gtest/gtest.h>
 
 #include <sstream>
@@ -44,12 +43,12 @@ class McmcHmcIntegratorsImplLeapfrogF : public testing::Test {
   stan::callbacks::stream_logger logger;
 
   // integrator under test
-  stan::mcmc::impl_leapfrog<
-      stan::mcmc::unit_e_metric<command_model_namespace::command_model, stan::rng_t> >
+  stan::mcmc::impl_leapfrog<stan::mcmc::unit_e_metric<
+      command_model_namespace::command_model, stan::rng_t> >
       unit_e_integrator;
 
-  stan::mcmc::impl_leapfrog<
-      stan::mcmc::diag_e_metric<command_model_namespace::command_model, stan::rng_t> >
+  stan::mcmc::impl_leapfrog<stan::mcmc::diag_e_metric<
+      command_model_namespace::command_model, stan::rng_t> >
       diag_e_integrator;
 
   stan::mcmc::impl_leapfrog<stan::mcmc::softabs_metric<
@@ -105,7 +104,8 @@ TEST_F(McmcHmcIntegratorsImplLeapfrogF, softabs_begin_update_p) {
   EXPECT_NEAR(z.g(0), 1.99987371079118, 1e-15);
 
   // setup hamiltonian
-  stan::mcmc::softabs_metric<command_model_namespace::command_model, stan::rng_t>
+  stan::mcmc::softabs_metric<command_model_namespace::command_model,
+                             stan::rng_t>
       hamiltonian(*model);
 
   // setup epsilon
@@ -171,7 +171,8 @@ TEST_F(McmcHmcIntegratorsImplLeapfrogF, softabs_update_q) {
   EXPECT_NEAR(z.g(0), 1.99987371079118, 1e-15);
 
   // setup hamiltonian
-  stan::mcmc::softabs_metric<command_model_namespace::command_model, stan::rng_t>
+  stan::mcmc::softabs_metric<command_model_namespace::command_model,
+                             stan::rng_t>
       hamiltonian(*model);
 
   // setup epsilon
@@ -237,7 +238,8 @@ TEST_F(McmcHmcIntegratorsImplLeapfrogF, softabs_end_update_p) {
   EXPECT_NEAR(z.g(0), 1.67264975797776, 1e-15);
 
   // setup hamiltonian
-  stan::mcmc::softabs_metric<command_model_namespace::command_model, stan::rng_t>
+  stan::mcmc::softabs_metric<command_model_namespace::command_model,
+                             stan::rng_t>
       hamiltonian(*model);
 
   // setup epsilon
@@ -559,7 +561,8 @@ TEST_F(McmcHmcIntegratorsImplLeapfrogF, softabs_evolve) {
   EXPECT_NEAR(z.g(0), 1.27097196280777, 1e-15);
 
   // setup hamiltonian
-  stan::mcmc::softabs_metric<command_model_namespace::command_model, stan::rng_t>
+  stan::mcmc::softabs_metric<command_model_namespace::command_model,
+                             stan::rng_t>
       hamiltonian(*model);
 
   // setup epsilon
@@ -583,8 +586,8 @@ TEST_F(McmcHmcIntegratorsImplLeapfrogF, softabs_evolve) {
 TEST_F(McmcHmcIntegratorsImplLeapfrogF, streams) {
   stan::test::capture_std_streams();
 
-  typedef stan::mcmc::impl_leapfrog<
-      stan::mcmc::unit_e_metric<command_model_namespace::command_model, stan::rng_t> >
+  typedef stan::mcmc::impl_leapfrog<stan::mcmc::unit_e_metric<
+      command_model_namespace::command_model, stan::rng_t> >
       integrator;
 
   EXPECT_NO_THROW(integrator i);

diff --git a/src/test/unit/variational/advi_messages_test.cpp b/src/test/unit/variational/advi_messages_test.cpp
@@ -8,7 +8,6 @@
 #include <iostream>
 #include <stan/services/util/create_rng.hpp>
 
-
 class advi_test : public ::testing::Test {
  public:
   advi_test()
@@ -56,8 +55,8 @@ class advi_test : public ::testing::Test {
 
   stan::variational::advi<stan_model, stan::variational::normal_meanfield,
                           stan::rng_t> *advi_meanfield_;
-  stan::variational::advi<stan_model, stan::variational::normal_fullrank, stan::rng_t>
-      *advi_fullrank_;
+  stan::variational::advi<stan_model, stan::variational::normal_fullrank,
+                          stan::rng_t> *advi_fullrank_;
   std::stringstream model_stream_;
   std::stringstream log_stream_;
   std::stringstream parameter_stream_;

diff --git a/src/test/unit/variational/advi_multivar_no_constraint_test.cpp b/src/test/unit/variational/advi_multivar_no_constraint_test.cpp
@@ -35,7 +35,8 @@ TEST(advi_test, multivar_no_constraint_fullrank) {
   cont_params(1) = 0.75;
 
   // ADVI
-  stan::variational::advi<Model, stan::variational::normal_fullrank, stan::rng_t>
+  stan::variational::advi<Model, stan::variational::normal_fullrank,
+                          stan::rng_t>
       test_advi(my_model, cont_params, base_rng, n_monte_carlo_grad,
                 n_grad_samples, 100, 1);
 
@@ -152,7 +153,8 @@ TEST(advi_test, multivar_no_constraint_meanfield) {
   cont_params(1) = 0.75;
 
   // ADVI
-  stan::variational::advi<Model, stan::variational::normal_meanfield, stan::rng_t>
+  stan::variational::advi<Model, stan::variational::normal_meanfield,
+                          stan::rng_t>
       test_advi(my_model, cont_params, base_rng, n_monte_carlo_grad,
                 1e4,  // absurdly high!
                 100, 1);

diff --git a/src/test/unit/variational/eta_adapt_big_test.cpp b/src/test/unit/variational/eta_adapt_big_test.cpp
@@ -42,8 +42,8 @@ class eta_adapt_big_test : public ::testing::Test {
 
   stan::variational::advi<stan_model, stan::variational::normal_meanfield,
                           stan::rng_t> *advi_meanfield_;
-  stan::variational::advi<stan_model, stan::variational::normal_fullrank, stan::rng_t>
-      *advi_fullrank_;
+  stan::variational::advi<stan_model, stan::variational::normal_fullrank,
+                          stan::rng_t> *advi_fullrank_;
   std::stringstream model_stream_;
   std::stringstream log_stream_;
   stan::callbacks::stream_logger logger;

diff --git a/src/test/unit/variational/eta_adapt_fail_test.cpp b/src/test/unit/variational/eta_adapt_fail_test.cpp
@@ -42,8 +42,8 @@ class eta_should_fail_test : public ::testing::Test {
 
   stan::variational::advi<stan_model, stan::variational::normal_meanfield,
                           stan::rng_t> *advi_meanfield_;
-  stan::variational::advi<stan_model, stan::variational::normal_fullrank, stan::rng_t>
-      *advi_fullrank_;
+  stan::variational::advi<stan_model, stan::variational::normal_fullrank,
+                          stan::rng_t> *advi_fullrank_;
   std::stringstream model_stream_;
   std::stringstream log_stream_;
   stan::callbacks::stream_logger logger;

diff --git a/src/test/unit/variational/eta_adapt_small_test.cpp b/src/test/unit/variational/eta_adapt_small_test.cpp
@@ -43,8 +43,8 @@ class eta_adapt_small_test : public ::testing::Test {
 
   stan::variational::advi<stan_model, stan::variational::normal_meanfield,
                           stan::rng_t> *advi_meanfield_;
-  stan::variational::advi<stan_model, stan::variational::normal_fullrank, stan::rng_t>
-      *advi_fullrank_;
+  stan::variational::advi<stan_model, stan::variational::normal_fullrank,
+                          stan::rng_t> *advi_fullrank_;
   std::stringstream model_stream_;
   std::stringstream log_stream_;
   stan::callbacks::stream_logger logger;

diff --git a/src/test/unit/variational/gradient_warn_test.cpp b/src/test/unit/variational/gradient_warn_test.cpp
@@ -10,7 +10,6 @@
 #include <string>
 #include <iostream>
 
-
 class advi_test : public ::testing::Test {
  public:
   advi_test()
@@ -50,8 +49,8 @@ class advi_test : public ::testing::Test {
 
   stan::variational::advi<stan_model, stan::variational::normal_meanfield,
                           stan::rng_t> *advi_meanfield_;
-  stan::variational::advi<stan_model, stan::variational::normal_fullrank, stan::rng_t>
-      *advi_fullrank_;
+  stan::variational::advi<stan_model, stan::variational::normal_fullrank,
+                          stan::rng_t> *advi_fullrank_;
   std::stringstream model_stream_;
   std::stringstream message_stream_;
   std::stringstream parameter_stream_;

diff --git a/src/test/unit/variational/hier_logistic_test.cpp b/src/test/unit/variational/hier_logistic_test.cpp
@@ -52,8 +52,8 @@ class advi_test : public ::testing::Test {
 
   stan::variational::advi<stan_model, stan::variational::normal_meanfield,
                           stan::rng_t> *advi_;
-  stan::variational::advi<stan_model, stan::variational::normal_fullrank, stan::rng_t>
-      *advi_fullrank_;
+  stan::variational::advi<stan_model, stan::variational::normal_fullrank,
+                          stan::rng_t> *advi_fullrank_;
   std::stringstream model_stream_;
   std::stringstream message_stream_;
   std::stringstream parameter_stream_;
-Original file line number
+Diff line change
@@ Expand Up / @@ -57,7 +57,6 @@ TEST(McmcSoftAbs, sample_p) { @@
     }
     TEST(McmcSoftAbs, gradients) {
       Eigen::VectorXd q = Eigen::VectorXd::Ones(11);
       stan::mcmc::softabs_point z(q.size());
@@ Expand Down @@