Custom CmdStan tarball unit tests #30
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| # Github Actions workflow to check CmdStanR tarball | |
| # yamllint disable rule:line-length | |
| name: Custom CmdStan tarball unit tests | |
| 'on': | |
| workflow_dispatch: | |
| inputs: | |
| tarball_url: | |
| description: 'CmdStan tarball URL to test with.' | |
| required: true | |
| default: 'latest' | |
| jobs: | |
| tarball-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release', rtools: ''} | |
| - {os: windows-latest, r: 'release', rtools: '42'} | |
| - {os: ubuntu-20.04, r: 'release', rtools: ''} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| CMDSTAN_TEST_TARBALL_URL: ${{ github.event.inputs.tarball_url }} | |
| NOT_CRAN: true | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libcurl4-openssl-dev || true | |
| sudo apt-get install -y openmpi-bin openmpi-common libopenmpi-dev || true | |
| - uses: r-lib/actions/[email protected] | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| rtools-version: ${{ matrix.config.rtools }} | |
| - uses: r-lib/actions/[email protected] | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install dependencies | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("rcmdcheck") | |
| remotes::install_local(path = ".", INSTALL_opts = "--no-test-load") | |
| cmdstanr::check_cmdstan_toolchain(fix = TRUE) | |
| if (Sys.getenv("CMDSTAN_TEST_TARBALL_URL") == "latest") { | |
| cmdstanr::install_cmdstan(cores = 2, overwrite = TRUE) | |
| } else { | |
| cmdstanr::install_cmdstan(cores = 2, overwrite = TRUE, release_url = "${{ github.event.inputs.tarball_url }}") | |
| } | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", "--ignore-vignettes"), build_args = c("--no-build-vignettes"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |